zzh
0 Followers · 0 Following
  • Joined on 2023-08-03
Repositories
22
 Projects Packages Public Activity Starred Repositories
Sort
Newest Oldest Alphabetically Reverse alphabetically Recently updated Least recently updated Most stars Fewest stars Most forks Fewest forks
BWA-FastAlign
C 0 0
结合fmt-index，pattern-based sw优化，低内存占用，高性能的序列比对程序，结果与bwa-mem一致
Updated 2026-01-25 23:13:55 +08:00
hyb-align
C 0 0
提出基于hybrid-index的seeding算法，提升bwa-mem的seeding阶段的性能
Updated 2026-01-19 15:00:53 +08:00
gatk-3.8
Java 0 0
gatk3的最后一个经典版本3.8
Updated 2026-01-07 18:21:56 +08:00
FastBQSR
C 0 0
对GATK bqsr部分进行并行优化
Updated 2026-01-06 14:40:08 +08:00
FastSort
C 0 0
# FastSort 对sam/bam文件进行排序，速度更快
Updated 2025-12-16 23:44:54 +08:00
sw_perf
C 0 0
将bwa的sw extend代码部分抽出来，做benchmark
Updated 2025-09-18 15:15:32 +08:00
fast-bwa
C 0 0
基于bwa，做一些优化，注释
Updated 2025-06-16 10:12:09 +08:00
FastDup
C 0 0
快速去冗余，输入是按照坐标排序的BAM/SAM文件
Updated 2025-04-23 15:07:31 +08:00
bwa_perf
C++ 0 0
对bwa各个部分进行性能测试分析
Updated 2024-02-13 11:39:30 +08:00
picard_cpp
C++ 0 0
cpp重写picard，对bam进行去冗余等操作
Updated 2023-12-08 03:57:35 +08:00
gsae
0 0
gene sequence analysis engine
Updated 2023-10-23 03:01:46 +08:00
mutect2
0 0
gatk4中mutect2的cpp实现
Updated 2023-10-21 00:35:38 +08:00
mutect1
0 0
mutect1算法的cpp实现
Updated 2023-10-21 00:35:05 +08:00
haplotypecaller
0 0
GATK的haplotype caller相同算法的cpp实现
Updated 2023-10-21 00:34:31 +08:00
bqsr
0 0
对bam进行碱基质量重校验
Updated 2023-10-21 00:31:06 +08:00