zzh - git server for zzh ICT

zzh pushed to main at zzh/BWA-FastAlign

e701805337 处理read seq的潜在的bug

2026-01-25 23:13:55 +08:00

zzh pushed to main at zzh/hyb-align

a4c2411d99 修复一个可能引起崩溃的bug，就是读取reads时，初始开辟的seqs个数可能不够，导致超出seqs内存，最终崩溃

2026-01-19 15:00:53 +08:00

zzh pushed to main at zzh/hyb-align

884e47d57d 将hyb-index和avx512的mate-sw结合起来了，速度很快

2026-01-19 01:17:51 +08:00

zzh pushed to main at zzh/BWA-FastAlign

fd21021e6a 清理了一下代码，优雅的处理u8和i16

2026-01-18 01:59:51 +08:00

zzh pushed to main at zzh/BWA-FastAlign

56c687d23d 改变了seq与task关联的方式，在线程中将task信息与对应的seq关联

2026-01-18 00:41:00 +08:00

zzh pushed to main at zzh/BWA-FastAlign

2c1f58fb50 添加了SAM_EXACT宏定义，可以选择结果精确（与bwa一致），或者更快一点，容许不一致，其实没有损失精度，结果不一致只是bwa里的排序不稳定导致的

2026-01-17 23:46:26 +08:00

zzh pushed to main at zzh/BWA-FastAlign

3dfff494f7 msw添加aln时，尝试了新的高效率的方式，结果还是差一些，代码保留，等会儿clean一下

2026-01-17 22:54:16 +08:00

zzh pushed to main at zzh/BWA-FastAlign

e335e79543 结果正确了，gen-sam过程应该还有性能提升空间

2026-01-17 01:00:52 +08:00

zzh pushed to main at zzh/BWA-FastAlign

67cbb5b8e9 改了几个bug，比如gen_sam需要全局id，dedup-sort需要一个一个做，现在还有一个问题，就是dedup-sort之后有些skip结果会变

2026-01-16 22:16:21 +08:00

zzh pushed to main at zzh/BWA-FastAlign

fb0cd0f663 修正了几个bug，但是目前结果还是不一致，还得继续调试

2026-01-16 02:54:16 +08:00

zzh pushed to main at zzh/BWA-FastAlign

e997699a47 修正了一个bug，是xtra赋值搞错了，第二阶段应该赋值给xtras2

2026-01-15 23:04:08 +08:00

zzh pushed to main at zzh/BWA-FastAlign

4c5e1e2fa1 完成了matesw的代码，但是还有bug，结果不一致

2026-01-13 23:37:09 +08:00

zzh pushed to main at zzh/hyb-align

74dc4829b8 添加了一些性能测试代码，如gen sam过程

2026-01-13 01:15:37 +08:00

zzh pushed to main at zzh/BWA-FastAlign

64b6f1fab2 粗糙的完成了mate sw计算，应该还有bug

2026-01-12 02:03:45 +08:00

zzh pushed to main at zzh/BWA-FastAlign

48fa3703ba 重构matesw计算，完成了一半的计算

2026-01-11 12:55:57 +08:00

zzh pushed to main at zzh/BWA-FastAlign

ac93233f2f Fix a bug in indexing process

0e7d839b2e Add test datasets in README

98f8a27a7c Rename FastAlign to BWA-FastAlign in README

643832af09 Revise README to enhance documentation and clarity

807c32066a update readme

2026-01-08 00:00:34 +08:00

zzh created branch main in zzh/BWA-FastAlign

2026-01-08 00:00:34 +08:00

zzh created repository zzh/BWA-FastAlign

2026-01-07 23:58:24 +08:00

zzh pushed to main at zzh/gatk-3.8

266936ed73 添加ProtectedCLGATK类，方便调试protect模块中的代码

2026-01-07 18:21:56 +08:00

zzh pushed to main at zzh/FastBQSR

b38214edd9 同上

90f6bc5cc0 测试过了5.1GB的数据，串行和多线程结果一致

Compare 2 commits »

2026-01-06 14:40:08 +08:00