zzh
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  • Joined on 2023-08-03
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zzh pushed to main at zzh/bwa_perf
22b75d335b 结果正确性没有问题，正在测试速度，稍快一些
2024-01-28 14:51:44 +08:00
zzh pushed to main at zzh/bwa_perf
c69cb901bb 解决了一些bug，目前看来fmt可以正常工作
8e1576a2cd 对代码进行了重构，基本完成了fmt-index数据结构的建立和序列查找代码，保留着一些调试信息
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2024-01-27 00:53:29 +08:00
zzh pushed to main at zzh/bwa_perf
0a98a0cfab 对代码进行了重构，基本完成了fmt-index数据结构的建立和序列查找代码
2024-01-25 15:41:02 +08:00
zzh pushed to main at zzh/bwa_perf
6161808f60 Merge branch 'main' of ssh://zzhict.top:6622/zzh/bwa_perf into main
51127278f0 bwa-mem各个部分优化和测试工程，初始化
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2024-01-25 08:59:56 +08:00
zzh pushed to main at zzh/fast-bwa
e18e60c0b5 实现了用33bit表示sa，间隔为4，释放内存的时候会崩溃
2023-12-27 10:42:15 +08:00
zzh pushed to main at zzh/fast-bwa
ed01396d73 添加了运行时间计算代码，用来分析性能
2023-12-25 13:58:20 +08:00
zzh pushed to main at zzh/fast-bwa
d304f030fb 添加了fmt_idx文件，开始改进seed过程
2023-12-25 11:11:25 +08:00
zzh pushed to main at zzh/fast-bwa
a37cb500e2 第一次merge
ea9e707238 添加了一些注释
139f68fc4c Merge pull request #367 from martin-g/github-actions-linux-aarch64
94248a8cea Add CI job for Ubuntu 20.04 aarch64
2e603e4581 Merge pull request #359 from jmarshall/neon
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2023-12-24 17:27:42 +08:00
zzh created repository zzh/fast-bwa
2023-12-24 17:21:31 +08:00
zzh pushed to main at zzh/picard_cpp
38bc489004 串行程序没有错误了，用vector代替set成功，时间减少了一半
2023-12-08 03:57:35 +08:00
zzh pushed to main at zzh/picard_cpp
2d114058a1 normal没问题了，tumor结果还不一样
2023-12-04 18:02:13 +08:00
zzh pushed to main at zzh/picard_cpp
36b1430da5 串行得到了正确的结果，但还需优化
2023-11-28 10:45:48 +08:00
zzh pushed to main at zzh/picard_cpp
97d35a42e9 并行处理框架搭建完成，基本完成了工作线程处理逻辑
2023-11-09 21:08:03 +08:00
zzh pushed to main at zzh/picard_cpp
a3a0b64ef2 重构，修改bambuf，支持清理某个read之前的缓存
2023-11-06 12:38:34 +08:00
zzh pushed to main at zzh/picard_cpp
023836a047 基本完成了参数的处理，帮助信息里有些参数需要删掉
2023-11-01 10:48:08 +08:00
zzh pushed to main at zzh/picard_cpp
95b0f685ff 配置了cmake和调试环境
2023-10-23 23:07:04 +08:00
zzh pushed to main at zzh/picard_cpp
a2a9067ec5 init stubs
2023-10-23 21:51:45 +08:00
zzh created repository zzh/picard_cpp
2023-10-23 15:56:06 +08:00
zzh created repository zzh/gsae
2023-10-23 03:01:46 +08:00
zzh created repository zzh/mutect2
2023-10-21 00:35:38 +08:00