zzh
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  • Joined on 2023-08-03
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zzh pushed to main at zzh/FastDup
b0b9efdc66 Add test files and script
2025-04-16 22:20:28 +08:00
zzh created repository zzh/FastBQSR
2025-04-15 16:48:37 +08:00
zzh pushed to main at zzh/FastDup
32920ffe64 注释了一些调试代码
2025-04-14 15:36:25 +08:00
zzh created repository zzh/FastDup
2025-04-14 15:35:53 +08:00
zzh pushed to single-seq at zzh/fast-bwa
8f3cb79d6f 在avx2中加入了一些特殊判断，保证了和串行的sw结果保持基本一致
2024-03-01 18:45:14 +08:00
zzh pushed to single-seq at zzh/fast-bwa
5cd4c10858 减少了频繁开辟释放内存，基本是所有优化手段都加上了，只是simd版本的准确性还有待进一步完善
2024-02-27 16:11:06 +08:00
zzh created branch single-seq in zzh/fast-bwa
2024-02-23 01:13:21 +08:00
zzh pushed to single-seq at zzh/fast-bwa
2024-02-23 01:13:21 +08:00
zzh pushed to main at zzh/fast-bwa
02a6116131 将seed和extend部分修改成了batch模式，好像没啥效果
2024-02-23 01:09:13 +08:00
zzh pushed to main at zzh/fast-bwa
d51903b923 忽略sam文件
a1a3f4215c 删除调试输出的sam文件
Compare 2 commits »
2024-02-22 01:32:23 +08:00
zzh pushed to main at zzh/fast-bwa
198fe34ddb 做了一些代码清理，目前结果应该是完全一致的
2024-02-22 01:28:22 +08:00
zzh pushed to main at zzh/fast-bwa
57a6ff7b07 解决了sa的bug，现在结果和原版一模一样
2024-02-21 15:22:00 +08:00
zzh pushed to main at zzh/fast-bwa
c288e1b285 实现了seed过程的所有加速想法，seed部分实现了3倍左右加速比
2024-02-20 01:12:06 +08:00
zzh pushed to main at zzh/fast-bwa
95fd6e018b 修改一些注释疏忽的问题
2024-02-16 21:24:04 +08:00
zzh pushed to main at zzh/fast-bwa
e9022723e6 seed三个步骤，全部用fmt实现，而且结果一致
2024-02-16 21:00:04 +08:00
zzh pushed to main at zzh/fast-bwa
980588a9ac 添加了bit过滤，解决了一些bug，现在seed1和seed2都没问题了
2024-02-16 00:18:18 +08:00
zzh pushed to main at zzh/fast-bwa
76c32542e7 seed1和seed2结果都正确
2024-02-13 13:37:11 +08:00
zzh pushed to main at zzh/bwa_perf
b0cfa3630e 添加了kmer_bit，用来检测特定长度的kmer有没有对应的fm-index匹配
2024-02-13 11:39:30 +08:00
zzh pushed to main at zzh/fast-bwa
32be32c661 kmer长度变为14，结果正确
2024-02-12 20:55:01 +08:00
zzh pushed to main at zzh/bwa_perf
1b77566567 添加了14个碱基长度的kmer结果，还没有合并
2024-02-10 19:04:37 +08:00