zzh
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  • Joined on 2023-08-03
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zzh pushed to main at zzh/hyb-align
70979c1b60 hybrid-index和bwt结果一致
2025-11-16 01:37:26 +08:00
zzh pushed to main at zzh/hyb-align
caf01ce0f3 完成了hybrid index的创建代码，还没测试
2025-11-08 14:44:55 +08:00
zzh pushed to main at zzh/hyb-align
74b464ee4a 添加了创建byte_sa和kmer index的代码
2025-11-07 21:31:14 +08:00
zzh pushed to main at zzh/hyb-align
b5ee622884 基于bwa Release bwa-0.7.19 (r1273) 开始实现hybrid-index
2025-10-23 10:34:01 +08:00
zzh created repository zzh/hyb-align
2025-10-22 15:47:05 +08:00
zzh pushed to main at zzh/sw_perf
093aeda028 merge
338c56e6ed 完成avx2的align代码
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2025-09-18 15:15:32 +08:00
zzh pushed to main at zzh/sw_perf
b4615f890f implement ksw_align with avx2 instructions
2025-09-09 16:07:48 +08:00
zzh pushed to hyb-main at zzh/fast-bwa
fb5279120b hybrid index实现seeding过程的初始代码
2025-06-16 10:12:08 +08:00
zzh created branch hyb-main in zzh/fast-bwa
2025-06-16 10:12:08 +08:00
zzh pushed to main at zzh/FastSort
ee16392150 当前可以并行解析block，但是要求每个block必须包含整数个bam，也就是block的起始位置一定要是一个bam的起始数据
2025-04-26 19:58:10 +08:00
zzh pushed to main at zzh/FastSort
c488d139db 刚才还有个bug，就是剩余的长度正好时18字节的时候，<改成<=就行了，bugfix
2025-04-25 15:43:40 +08:00
zzh pushed to main at zzh/FastSort
dbe57f345c 添加了并行流水线框架
7ee5241029 解决了读如文件时，解析block跨buffer的bug
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2025-04-25 15:34:53 +08:00
zzh pushed to main at zzh/FastSort
0d2c533d59 添加了串行解析线程
2025-04-23 22:08:44 +08:00
zzh pushed to main at zzh/FastDup
62538d512d update some annotations
2025-04-23 15:07:31 +08:00
zzh pushed to main at zzh/FastDup
6175ce9a83 Merge branch 'main' of https://github.com/zzhofict/FastDup
8cbff0ff69 update readme
49ecf7ae5f update readme
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2025-04-23 15:04:04 +08:00
zzh pushed to main at zzh/FastDup
ab7da8a7d7 Change some annotations
2025-04-23 14:59:45 +08:00
zzh pushed to main at zzh/FastSort
9b2c35eaeb 解析header完整了，读取文件并解析gz block的框架正确了
2025-04-22 00:38:44 +08:00
zzh pushed to main at zzh/FastSort
bcb8b420ba 正常读完文件，然后退出
2025-04-17 18:29:16 +08:00
zzh pushed to main at zzh/FastSort
588abd70f2 Init
2025-04-17 16:17:48 +08:00
zzh created repository zzh/FastSort
2025-04-17 16:13:22 +08:00