zzh
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  • Joined on 2023-08-03
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zzh pushed to main at zzh/FastBQSR
146055fc01 bqsr第一阶段完成了，结果还有点错误，得调试一下
2025-12-28 14:33:50 +08:00
zzh pushed to main at zzh/FastBQSR
25f079b936 串行版本还差最后一步，将信息合并到数据汇总表中
2025-12-24 12:47:30 +08:00
zzh pushed to main at zzh/FastBQSR
1e9b58fac1 到了读取和解析known vcf部分了，性能还需优化
2025-12-20 16:35:49 +08:00
zzh pushed to main at zzh/FastSort
afe6abc857 线程内排序，线程间merge，线程内压缩，还没输出
2025-12-16 23:44:54 +08:00
zzh pushed to main at zzh/hyb-align
f00e492c99 err_check，添加文件信息
2025-12-14 21:29:17 +08:00
zzh pushed to main at zzh/FastSort
ab7e3989d0 Merge branch 'main' of ssh://zzhict.top:6622/zzh/FastSort
3560b5a504 两种不同的多线程数据分配策略
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2025-12-14 01:03:08 +08:00
zzh pushed to main at zzh/FastBQSR
0fca937fab 搭建串行框架
2025-12-04 22:26:18 +08:00
zzh pushed to main at zzh/hyb-align
49028547ac 更新了性能测试
2025-12-04 17:04:16 +08:00
zzh pushed to main at zzh/FastBQSR
14f1611ab6 FastBQSR Init and Merge
e4d26486ef FastBQSR Init
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2025-11-23 23:07:31 +08:00
zzh pushed to main at zzh/hyb-align
70979c1b60 hybrid-index和bwt结果一致
2025-11-16 01:37:26 +08:00
zzh pushed to main at zzh/hyb-align
caf01ce0f3 完成了hybrid index的创建代码，还没测试
2025-11-08 14:44:55 +08:00
zzh pushed to main at zzh/hyb-align
74b464ee4a 添加了创建byte_sa和kmer index的代码
2025-11-07 21:31:14 +08:00
zzh pushed to main at zzh/hyb-align
b5ee622884 基于bwa Release bwa-0.7.19 (r1273) 开始实现hybrid-index
2025-10-23 10:34:01 +08:00
zzh created repository zzh/hyb-align
2025-10-22 15:47:05 +08:00
zzh pushed to main at zzh/sw_perf
093aeda028 merge
338c56e6ed 完成avx2的align代码
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2025-09-18 15:15:32 +08:00
zzh pushed to main at zzh/sw_perf
b4615f890f implement ksw_align with avx2 instructions
2025-09-09 16:07:48 +08:00
zzh pushed to hyb-main at zzh/fast-bwa
fb5279120b hybrid index实现seeding过程的初始代码
2025-06-16 10:12:08 +08:00
zzh created branch hyb-main in zzh/fast-bwa
2025-06-16 10:12:08 +08:00
zzh pushed to main at zzh/FastSort
ee16392150 当前可以并行解析block，但是要求每个block必须包含整数个bam，也就是block的起始位置一定要是一个bam的起始数据
2025-04-26 19:58:10 +08:00
zzh pushed to main at zzh/FastSort
c488d139db 刚才还有个bug，就是剩余的长度正好时18字节的时候，<改成<=就行了，bugfix
2025-04-25 15:43:40 +08:00