zzh
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  • Joined on 2023-08-03
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zzh pushed to main at zzh/BWA-FastAlign
fb0cd0f663 修正了几个bug，但是目前结果还是不一致，还得继续调试
2026-01-16 02:54:16 +08:00
zzh pushed to main at zzh/BWA-FastAlign
e997699a47 修正了一个bug，是xtra赋值搞错了，第二阶段应该赋值给xtras2
2026-01-15 23:04:08 +08:00
zzh pushed to main at zzh/BWA-FastAlign
4c5e1e2fa1 完成了matesw的代码，但是还有bug，结果不一致
2026-01-13 23:37:09 +08:00
zzh pushed to main at zzh/hyb-align
74dc4829b8 添加了一些性能测试代码，如gen sam过程
2026-01-13 01:15:37 +08:00
zzh pushed to main at zzh/BWA-FastAlign
64b6f1fab2 粗糙的完成了mate sw计算，应该还有bug
2026-01-12 02:03:45 +08:00
zzh pushed to main at zzh/BWA-FastAlign
48fa3703ba 重构matesw计算，完成了一半的计算
2026-01-11 12:55:57 +08:00
zzh pushed to main at zzh/BWA-FastAlign
ac93233f2f Fix a bug in indexing process
0e7d839b2e Add test datasets in README
98f8a27a7c Rename FastAlign to BWA-FastAlign in README
643832af09 Revise README to enhance documentation and clarity
807c32066a update readme
2026-01-08 00:00:34 +08:00
zzh created branch main in zzh/BWA-FastAlign
2026-01-08 00:00:34 +08:00
zzh created repository zzh/BWA-FastAlign
2026-01-07 23:58:24 +08:00
zzh pushed to main at zzh/gatk-3.8
266936ed73 添加ProtectedCLGATK类，方便调试protect模块中的代码
2026-01-07 18:21:56 +08:00
zzh pushed to main at zzh/FastBQSR
b38214edd9 同上
90f6bc5cc0 测试过了5.1GB的数据，串行和多线程结果一致
Compare 2 commits »
2026-01-06 14:40:08 +08:00
zzh pushed to main at zzh/gatk-3.8
56e0098a71 忽略target子文件夹
aa8764d6c3 Update pom versions for the 3.8-1 release
e4c24188b2 Merge remote-tracking branch 'unstable/master'
c654e0b9a2 Update pom versions to mark the start of GATK 3.9 development
a2f45944f3 Serialized GMM no longer depends on command line annotation order (#1632)
Compare 10 commits »
2026-01-05 19:08:01 +08:00
zzh created branch main in zzh/gatk-3.8
2026-01-05 19:08:01 +08:00
zzh created repository zzh/gatk-3.8
2026-01-05 19:03:53 +08:00
zzh pushed to main at zzh/FastBQSR
4f9fecf078 实现了并行，小数据上结果一致，大数据还没测试
2026-01-05 02:17:40 +08:00
zzh pushed to main at zzh/FastBQSR
022e70e1f3 解决了bug，现在apply bqsr结果一致了，原因是读取bqsr table的时候，并没有将table中的empiricalQuality赋值给Datum，是后续在计算质量分数的时候重新计算的empiricalQuality
2026-01-04 16:27:59 +08:00
zzh pushed to main at zzh/FastBQSR
94e06338cd 实现了apply bqsr的单线程版本，结果还有点错误，继续调试
2026-01-03 22:10:49 +08:00
zzh pushed to main at zzh/FastBQSR
985875ebac 调整了计算read group的方式，当read group只有一个时，不需要计算
2026-01-01 09:40:50 +08:00
zzh pushed to main at zzh/FastBQSR
745963831d 完善了统计时间
2026-01-01 00:41:59 +08:00
zzh pushed to main at zzh/FastBQSR
95c4a16151 终于解决了最后的bug，并行结果与串行结果一致，与gatk一致。是index的search interval函数导致的，之前这个函数搜索的区间是包含大于等于start，而且大于等于end，正确的搜索应该是变异的end大于等于start
2025-12-31 23:01:20 +08:00