zzh
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  • Joined on 2023-08-03
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BWA-FastAlign
C 0 0
结合fmt-index，pattern-based sw优化，低内存占用，高性能的序列比对程序，结果与bwa-mem一致
Updated 2026-01-25 23:13:55 +08:00
hyb-align
C 0 0
提出基于hybrid-index的seeding算法，提升bwa-mem的seeding阶段的性能
Updated 2026-01-19 15:00:53 +08:00
FastBQSR
C 0 0
对GATK bqsr部分进行并行优化
Updated 2026-01-06 14:40:08 +08:00
FastSort
C 0 0
# FastSort 对sam/bam文件进行排序，速度更快
Updated 2025-12-16 23:44:54 +08:00
sw_perf
C 0 0
将bwa的sw extend代码部分抽出来，做benchmark
Updated 2025-09-18 15:15:32 +08:00
fast-bwa
C 0 0
基于bwa，做一些优化，注释
Updated 2025-06-16 10:12:09 +08:00
FastDup
C 0 0
快速去冗余，输入是按照坐标排序的BAM/SAM文件
Updated 2025-04-23 15:07:31 +08:00
bwa
C 0 0
对bwa-mem过程进行加速优化
Updated 2023-08-24 14:30:07 +08:00
minimap2
C 0 0
针对三代测序的比对工具，在原程序基础之上，做一些并行优化
Updated 2023-08-10 15:56:20 +08:00