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将bwa的sw extend代码部分抽出来，做benchmark
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Makefile 0.5%
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zzh b53569db63 代码重构，总共7个kernel 2023-08-26 00:38:38 +08:00
.vscode 代码重构，总共7个kernel 2023-08-26 00:38:38 +08:00
.gitignore 初始化bsw文件 2023-08-15 22:19:39 +08:00
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ksw_ext_avx2.c 代码重构，总共7个kernel 2023-08-26 00:38:38 +08:00
ksw_ext_avx2_aligned.c 代码重构，总共7个kernel 2023-08-26 00:38:38 +08:00
ksw_ext_avx2_heuristics.c 代码重构，总共7个kernel 2023-08-26 00:38:38 +08:00
ksw_ext_avx2_u8.c 代码重构，总共7个kernel 2023-08-26 00:38:38 +08:00
ksw_ext_avx2_u8_aligned.c 代码重构，总共7个kernel 2023-08-26 00:38:38 +08:00
ksw_ext_avx2_u8_heuristics.c 代码重构，总共7个kernel 2023-08-26 00:38:38 +08:00
ksw_ext_cuda.c 代码重构，总共7个kernel 2023-08-26 00:38:38 +08:00
ksw_ext_normal.c 代码重构，总共7个kernel 2023-08-26 00:38:38 +08:00
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utils.c 代码重构，总共7个kernel 2023-08-26 00:38:38 +08:00
utils.h 代码重构，总共7个kernel 2023-08-26 00:38:38 +08:00

README.md

sw_perf

  • 对bwa的sw extend部分代码进行抽取，做成benchmark
  • 实现avx2和cuda版本，并进行性能对比