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# sw_perf
- 对bwa的sw相关代码进行抽取和优化实现，做成benchmark
- bwa有三个部分包含sw算法，分别是seed-extension阶段，生成sam阶段的计算pair-end align分值，以及最后生成cigar的global
- 实现avx2和cuda版本，并进行性能对比