/*********************************************************************************************
    Description: Declarations of sw extend functions

    Copyright : All right reserved by NCIC.ICT

    Author : Zhang Zhonghai
    Date : 2023/08/23
***********************************************************************************************/
#ifndef __EXTEND_H
#define __EXTEND_H
#include <stdint.h>

#define EXTEND_FUNC_NUM 4

typedef struct _byte_mem_t byte_mem_t;

int extend_scalar(byte_mem_t *bmem, int qlen, const uint8_t *query, int tlen, const uint8_t *target, int m, const int8_t *mat, int o_del, int e_del, int o_ins, int e_ins, int w, int end_bonus, int zdrop, int h0, int *_qle, int *_tle, int *_gtle, int *_gscore, int *_max_off);
int extend_avx2_i16(byte_mem_t *bmem, int qlen, const uint8_t *query, int tlen, const uint8_t *target, int m, const int8_t *mat, int o_del, int e_del, int o_ins, int e_ins, int w, int end_bonus, int zdrop, int h0, int *_qle, int *_tle, int *_gtle, int *_gscore, int *_max_off);
int extend_avx2_u8(byte_mem_t *bmem, int qlen, const uint8_t *query, int tlen, const uint8_t *target, int m, const int8_t *mat, int o_del, int e_del, int o_ins, int e_ins, int w, int end_bonus, int zdrop, int h0, int *_qle, int *_tle, int *_gtle, int *_gscore, int *_max_off);
int extend_avx2_i16_sp(byte_mem_t *bmem, int qlen, const uint8_t *query, int tlen, const uint8_t *target, int m, const int8_t *mat, int o_del, int e_del, int o_ins, int e_ins, int w, int end_bonus, int zdrop, int h0, int *_qle, int *_tle, int *_gtle, int *_gscore, int *_max_off);

int main_extend(int argc, char *argv[]);
#endif