23 lines
1.6 KiB
C
23 lines
1.6 KiB
C
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/*********************************************************************************************
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Description: Declarations of sw extend functions
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Copyright : All right reserved by NCIC.ICT
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Author : Zhang Zhonghai
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Date : 2023/08/23
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***********************************************************************************************/
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#ifndef __EXTEND_H
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#define __EXTEND_H
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#include <stdint.h>
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#define EXTEND_FUNC_NUM 4
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typedef struct _byte_mem_t byte_mem_t;
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int extend_scalar(byte_mem_t *bmem, int qlen, const uint8_t *query, int tlen, const uint8_t *target, int m, const int8_t *mat, int o_del, int e_del, int o_ins, int e_ins, int w, int end_bonus, int zdrop, int h0, int *_qle, int *_tle, int *_gtle, int *_gscore, int *_max_off);
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int extend_avx2_i16(byte_mem_t *bmem, int qlen, const uint8_t *query, int tlen, const uint8_t *target, int m, const int8_t *mat, int o_del, int e_del, int o_ins, int e_ins, int w, int end_bonus, int zdrop, int h0, int *_qle, int *_tle, int *_gtle, int *_gscore, int *_max_off);
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int extend_avx2_u8(byte_mem_t *bmem, int qlen, const uint8_t *query, int tlen, const uint8_t *target, int m, const int8_t *mat, int o_del, int e_del, int o_ins, int e_ins, int w, int end_bonus, int zdrop, int h0, int *_qle, int *_tle, int *_gtle, int *_gscore, int *_max_off);
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int extend_avx2_i16_sp(byte_mem_t *bmem, int qlen, const uint8_t *query, int tlen, const uint8_t *target, int m, const int8_t *mat, int o_del, int e_del, int o_ins, int e_ins, int w, int end_bonus, int zdrop, int h0, int *_qle, int *_tle, int *_gtle, int *_gscore, int *_max_off);
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int main_extend(int argc, char *argv[]);
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#endif
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