23 lines
547 B
Bash
Executable File
23 lines
547 B
Bash
Executable File
input=~/data/bam/zy_normal.bam
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#input=~/data/bam/zy_tumor.bam
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#input=~/data/bam/100w.bam
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#input=~/data/bam/1kw.sam
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#input=~/data/bam/n1kw.sam
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time /home/zzh/work/ngs/picard_cpp/build/bin/picard_cpp \
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MarkDuplicates \
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--INPUT $input \
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--OUTPUT ~/data/bam/out.bam \
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--INDEX_FORMAT BAI \
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--num_threads 1 \
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--max_mem 1G \
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--verbosity DEBUG \
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--asyncio true #\
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#--READ_NAME_REGEX ".*?([0-9]+):([0-9]+):([0-9]+)$"
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# --INPUT /mnt/d/data/100w.bam \
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# --INPUT /mnt/d/data/zy_normal.bam \
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# zy_tumor
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# tumor_region
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