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picard_cpp
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测试tumor

This commit is contained in:
zzh 2024-11-21 16:44:49 +08:00
parent e348f96504
commit e4aa0362f9
1 changed files with 3 additions and 3 deletions
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6
run.sh
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@ -7,8 +7,8 @@ nthread=32
#nthread=64 #nthread=64
#nthread=128 #nthread=128
#input=/home/zzh/data/bam/zy_normal.bam #input=/home/zzh/data/bam/zy_normal.bam
#input=/home/zzh/data/bam/zy_tumor.bam input=/home/zzh/data/bam/zy_tumor.bam
input=/home/zzh/data/wgs_na12878.bam #input=/home/zzh/data/wgs_na12878.bam
#input=~/data/bam/100w.bam #input=~/data/bam/100w.bam
#input=~/data/bam/t100w.sam #input=~/data/bam/t100w.sam
#input=~/data/bam/1k.sam #input=~/data/bam/1k.sam
@ -27,7 +27,7 @@ time /home/zzh/work/ngs/picard_cpp/build/bin/picard_cpp \
--num_threads $nthread \ --num_threads $nthread \
--max_mem 2G \ --max_mem 2G \
--verbosity DEBUG \ --verbosity DEBUG \
--asyncio true -TAG_DUPLICATE_SET_MEMBERS true --READ_NAME_REGEX null # --asyncio true -TAG_DUPLICATE_SET_MEMBERS true #--READ_NAME_REGEX null #
#--TAG_DUPLICATE_SET_MEMBERS true #--READ_NAME_REGEX "" #--TAG_DUPLICATE_SET_MEMBERS true #--READ_NAME_REGEX ""
#--READ_NAME_REGEX ".*?([0-9]+):([0-9]+):([0-9]+)$" #--READ_NAME_REGEX ".*?([0-9]+):([0-9]+):([0-9]+)$"
#--READ_NAME_REGEX "" #--READ_NAME_REGEX ""