zzh
/
picard_cpp
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

测试tumor

This commit is contained in:
zzh 2024-11-21 16:44:49 +08:00
parent e348f96504
commit e4aa0362f9
1 changed files with 3 additions and 3 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

6
run.sh
View File

@ -7,8 +7,8 @@ nthread=32
#nthread=64
#nthread=128
#input=/home/zzh/data/bam/zy_normal.bam
#input=/home/zzh/data/bam/zy_tumor.bam
input=/home/zzh/data/wgs_na12878.bam
input=/home/zzh/data/bam/zy_tumor.bam
#input=/home/zzh/data/wgs_na12878.bam
#input=~/data/bam/100w.bam
#input=~/data/bam/t100w.sam
#input=~/data/bam/1k.sam
@ -27,7 +27,7 @@ time /home/zzh/work/ngs/picard_cpp/build/bin/picard_cpp \
--num_threads $nthread \
--max_mem 2G \
--verbosity DEBUG \
--asyncio true -TAG_DUPLICATE_SET_MEMBERS true --READ_NAME_REGEX null #
--asyncio true -TAG_DUPLICATE_SET_MEMBERS true #--READ_NAME_REGEX null #
#--TAG_DUPLICATE_SET_MEMBERS true #--READ_NAME_REGEX ""
#--READ_NAME_REGEX ".*?([0-9]+):([0-9]+):([0-9]+)$"
#--READ_NAME_REGEX ""