2023-11-01 10:48:02 +08:00
|
|
|
/home/zzh/work/GeneKit/picard_cpp/build/bin/picard_cpp \
|
|
|
|
|
MarkDuplicates \
|
2023-11-09 21:07:58 +08:00
|
|
|
--INPUT /mnt/d/data/zy_tumor.bam \
|
2023-11-01 10:48:02 +08:00
|
|
|
--OUTPUT out.bam \
|
2023-11-09 21:07:58 +08:00
|
|
|
--num_threads 16 \
|
2023-11-01 10:48:02 +08:00
|
|
|
--max_mem 4G \
|
|
|
|
|
--verbosity DEBUG \
|
2023-11-09 21:07:58 +08:00
|
|
|
--asyncio true #\
|
|
|
|
|
#--READ_NAME_REGEX ".*?([0-9]+):([0-9]+):([0-9]+)$"
|
2023-11-06 12:38:30 +08:00
|
|
|
|
|
|
|
|
|
|
|
|
|
# --INPUT /mnt/d/data/100w.bam \
|
|
|
|
|
# --INPUT /mnt/d/data/zy_normal.bam \
|
|
|
|
|
|
