2023-10-23 23:07:00 +08:00
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# 生成程序的位置
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SET(EXECUTABLE_OUTPUT_PATH "${PROJECT_BINARY_DIR}/bin")
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# 源码目录
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AUX_SOURCE_DIRECTORY(${PROJECT_SOURCE_DIR}/src MAIN_SRC)
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2023-11-01 10:48:02 +08:00
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AUX_SOURCE_DIRECTORY(${PROJECT_SOURCE_DIR}/src/common COMMON)
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2023-10-23 23:07:00 +08:00
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AUX_SOURCE_DIRECTORY(${PROJECT_SOURCE_DIR}/src/sam SAM_SRC)
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AUX_SOURCE_DIRECTORY(${PROJECT_SOURCE_DIR}/src/sam/markdups SAM_MARKDUPS_SRC)
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# 头文件目录
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INCLUDE_DIRECTORIES("${PROJECT_SOURCE_DIR}/src")
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INCLUDE_DIRECTORIES("${PROJECT_SOURCE_DIR}/lib")
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INCLUDE_DIRECTORIES("${PROJECT_SOURCE_DIR}/lib/htslib")
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# 链接库位置
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LINK_DIRECTORIES("${PROJECT_SOURCE_DIR}/lib/htslib")
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# 编译生成的程序名称
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set(PG_NAME "picard_cpp")
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# 为程序添加依赖关系
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2023-11-01 10:48:02 +08:00
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ADD_EXECUTABLE(${PG_NAME} ${MAIN_SRC} ${COMMON} ${SAM_SRC} ${SAM_MARKDUPS_SRC})
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2023-10-23 23:07:00 +08:00
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# 链接库
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TARGET_LINK_LIBRARIES(${PG_NAME} libhts.a)
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# 检测系统是否包含必需的库
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find_package(Threads REQUIRED)
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if(THREADS_HAVE_PTHREAD_ARG)
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set_property(TARGET ${PG_NAME} PROPERTY COMPILE_OPTIONS "-pthread")
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set_property(TARGET ${PG_NAME} PROPERTY INTERFACE_COMPILE_OPTIONS "-pthread")
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endif()
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if(CMAKE_THREAD_LIBS_INIT)
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TARGET_LINK_LIBRARIES(${PG_NAME} "${CMAKE_THREAD_LIBS_INIT}")
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endif()
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