26 lines
574 B
C
26 lines
574 B
C
#ifndef SDUST_H
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#define SDUST_H
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#include <stdint.h>
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struct sdust_buf_s;
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typedef struct sdust_buf_s sdust_buf_t;
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#ifdef __cplusplus
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extern "C" {
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#endif
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// the simple interface
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uint64_t *sdust(void *km, const uint8_t *seq, int l_seq, int T, int W, int *n);
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// the following interface dramatically reduce heap allocations when sdust is frequently called.
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sdust_buf_t *sdust_buf_init(void *km);
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void sdust_buf_destroy(sdust_buf_t *buf);
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const uint64_t *sdust_core(const uint8_t *seq, int l_seq, int T, int W, int *n, sdust_buf_t *buf);
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#ifdef __cplusplus
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}
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#endif
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#endif
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