|
.gitignore
|
make sdust working with kalloc
|
2017-04-06 15:51:36 -04:00 |
|
Makefile
|
enabled kalloc (was a mistake)
|
2017-06-26 15:41:55 -04:00 |
|
align.c
|
r87: fixed a bug in ksw2
|
2017-06-27 13:29:48 -04:00 |
|
bseq.c
|
index can be compiled; not tested yet
|
2017-04-07 15:30:30 -04:00 |
|
bseq.h
|
index can be compiled; not tested yet
|
2017-04-07 15:30:30 -04:00 |
|
chain.c
|
r89: added minimal number of minimizer counts
|
2017-06-27 18:43:15 -04:00 |
|
format.c
|
use long options
|
2017-06-26 12:31:36 -04:00 |
|
index.c
|
r77: fixed an index loading bug (offset not set)
|
2017-06-26 13:56:25 -04:00 |
|
kalloc.c
|
number of allocated units must be an even number
|
2017-06-26 23:15:30 -04:00 |
|
kalloc.h
|
Homopolymer-compressed k-mer sketch
|
2017-04-06 15:37:34 -04:00 |
|
kdq.h
|
make sdust working with kalloc
|
2017-04-06 15:51:36 -04:00 |
|
khash.h
|
index can be compiled; not tested yet
|
2017-04-07 15:30:30 -04:00 |
|
kseq.h
|
Homopolymer-compressed k-mer sketch
|
2017-04-06 15:37:34 -04:00 |
|
ksort.h
|
chaining
|
2017-05-03 20:47:29 +08:00 |
|
ksw2.h
|
r87: fixed a bug in ksw2
|
2017-06-27 13:29:48 -04:00 |
|
ksw2_extz2_sse.c
|
r88: fixed an out-of-boundary bug in ksw2
|
2017-06-27 14:50:31 -04:00 |
|
kthread.c
|
index can be compiled; not tested yet
|
2017-04-07 15:30:30 -04:00 |
|
kthread.h
|
index can be compiled; not tested yet
|
2017-04-07 15:30:30 -04:00 |
|
kvec.h
|
Homopolymer-compressed k-mer sketch
|
2017-04-06 15:37:34 -04:00 |
|
main.c
|
r92: fixed a bug for overlapping alignment
|
2017-06-27 22:03:31 -04:00 |
|
map.c
|
r92: fixed a bug for overlapping alignment
|
2017-06-27 22:03:31 -04:00 |
|
minimap.h
|
r89: added minimal number of minimizer counts
|
2017-06-27 18:43:15 -04:00 |
|
misc.c
|
sort positions in each bucket
|
2017-04-12 13:31:12 -04:00 |
|
mmpriv.h
|
r92: fixed a bug for overlapping alignment
|
2017-06-27 22:03:31 -04:00 |
|
sdust.c
|
fixed memory leaks
|
2017-06-06 21:45:55 -04:00 |
|
sdust.h
|
fixed a few memory leaks
|
2017-04-13 23:05:19 -04:00 |
|
sketch.c
|
wrong HPC
|
2017-05-04 17:45:19 +08:00 |
cdc2a1e29f