30 lines
531 B
C
30 lines
531 B
C
#ifndef MM_BSEQ_H
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#define MM_BSEQ_H
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#include <stdint.h>
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#ifdef __cplusplus
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extern "C" {
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#endif
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struct mm_bseq_file_s;
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typedef struct mm_bseq_file_s mm_bseq_file_t;
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typedef struct {
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int l_seq, rid;
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char *name, *seq, *qual;
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} mm_bseq1_t;
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mm_bseq_file_t *mm_bseq_open(const char *fn);
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void mm_bseq_close(mm_bseq_file_t *fp);
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mm_bseq1_t *mm_bseq_read(mm_bseq_file_t *fp, int chunk_size, int with_qual, int *n_);
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int mm_bseq_eof(mm_bseq_file_t *fp);
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extern unsigned char seq_nt4_table[256];
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#ifdef __cplusplus
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}
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#endif
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#endif
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