针对三代测序的比对工具，在原程序基础之上，做一些并行优化

Heng Li 6d4348db44 dp chaining mostly works, but fails sometimes ... which means there are bugs that need to be fixed		2017-06-06 14:19:50 -04:00
.gitignore	make sdust working with kalloc	2017-04-06 15:51:36 -04:00
Makefile	backup	2017-06-06 10:16:33 -04:00
bseq.c	index can be compiled; not tested yet	2017-04-07 15:30:30 -04:00
bseq.h	index can be compiled; not tested yet	2017-04-07 15:30:30 -04:00
chain.c	dp chaining mostly works, but fails sometimes	2017-06-06 14:19:50 -04:00
index.c	dp chaining mostly works, but fails sometimes	2017-06-06 14:19:50 -04:00
kalloc.c	fixed a few memory leaks	2017-04-13 23:05:19 -04:00
kalloc.h	Homopolymer-compressed k-mer sketch	2017-04-06 15:37:34 -04:00
kdq.h	make sdust working with kalloc	2017-04-06 15:51:36 -04:00
khash.h	index can be compiled; not tested yet	2017-04-07 15:30:30 -04:00
kseq.h	Homopolymer-compressed k-mer sketch	2017-04-06 15:37:34 -04:00
ksort.h	chaining	2017-05-03 20:47:29 +08:00
kthread.c	index can be compiled; not tested yet	2017-04-07 15:30:30 -04:00
kthread.h	index can be compiled; not tested yet	2017-04-07 15:30:30 -04:00
kvec.h	Homopolymer-compressed k-mer sketch	2017-04-06 15:37:34 -04:00
main.c	dp chaining mostly works, but fails sometimes	2017-06-06 14:19:50 -04:00
map.c	dp chaining mostly works, but fails sometimes	2017-06-06 14:19:50 -04:00
minimap.h	dp chaining mostly works, but fails sometimes	2017-06-06 14:19:50 -04:00
misc.c	sort positions in each bucket	2017-04-12 13:31:12 -04:00
mmpriv.h	dp chaining mostly works, but fails sometimes	2017-06-06 14:19:50 -04:00
sdust.c	make sdust work (it didn't)	2017-04-07 10:45:50 -04:00
sdust.h	fixed a few memory leaks	2017-04-13 23:05:19 -04:00
sketch.c	wrong HPC	2017-05-04 17:45:19 +08:00