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.gitignore
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make sdust working with kalloc
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2017-04-06 15:51:36 -04:00 |
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LICENSE.txt
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added license
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2017-07-01 11:39:19 -04:00 |
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Makefile
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code refactoring for mm_reg1_t
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2017-06-29 19:35:38 -04:00 |
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align.c
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r126: filter by fraction of seed coverage
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2017-06-30 22:15:45 -04:00 |
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bseq.c
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r131: wrong EOF test; make mb_size <= batch_size
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2017-07-01 09:26:09 -04:00 |
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bseq.h
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r129: fixed memory leak caused by qualities
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2017-06-30 23:48:00 -04:00 |
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chain.c
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finished the first draft of manpage
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2017-07-01 11:25:54 -04:00 |
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format.c
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r121: output QUAL and unmapped to SAM
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2017-06-30 14:40:54 -04:00 |
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hit.c
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r144: adjust primary aln after cigar
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2017-07-02 22:43:02 -04:00 |
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index.c
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r131: wrong EOF test; make mb_size <= batch_size
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2017-07-01 09:26:09 -04:00 |
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kalloc.c
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number of allocated units must be an even number
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2017-06-26 23:15:30 -04:00 |
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kalloc.h
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Homopolymer-compressed k-mer sketch
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2017-04-06 15:37:34 -04:00 |
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kdq.h
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make sdust working with kalloc
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2017-04-06 15:51:36 -04:00 |
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khash.h
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index can be compiled; not tested yet
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2017-04-07 15:30:30 -04:00 |
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kseq.h
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Homopolymer-compressed k-mer sketch
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2017-04-06 15:37:34 -04:00 |
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ksort.h
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chaining
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2017-05-03 20:47:29 +08:00 |
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ksw2.h
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backup
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2017-06-29 12:58:52 -04:00 |
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ksw2_extz2_sse.c
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backup
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2017-06-29 12:58:52 -04:00 |
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kthread.c
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index can be compiled; not tested yet
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2017-04-07 15:30:30 -04:00 |
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kthread.h
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index can be compiled; not tested yet
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2017-04-07 15:30:30 -04:00 |
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kvec.h
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Homopolymer-compressed k-mer sketch
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2017-04-06 15:37:34 -04:00 |
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main.c
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r144: adjust primary aln after cigar
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2017-07-02 22:43:02 -04:00 |
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map.c
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fixed bug when retaining 2ndary aln; still buggy
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2017-07-02 19:08:30 -04:00 |
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minimap.h
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r144: adjust primary aln after cigar
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2017-07-02 22:43:02 -04:00 |
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minimap2.1
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r141: replaced -b with -a (for SAM output)
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2017-07-01 16:54:59 -04:00 |
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misc.c
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sort positions in each bucket
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2017-04-12 13:31:12 -04:00 |
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mmpriv.h
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fixed bug when retaining 2ndary aln; still buggy
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2017-07-02 19:08:30 -04:00 |
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sdust.c
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fixed memory leaks
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2017-06-06 21:45:55 -04:00 |
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sdust.h
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fixed a few memory leaks
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2017-04-13 23:05:19 -04:00 |
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sketch.c
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wrong HPC
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2017-05-04 17:45:19 +08:00 |
632b8638d2