minimap2/tex/minimap2.bib

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	Journal = {BMC Bioinformatics},
	Pages = {238},
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@article{Liu:2016ab,
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	Journal = {Bioinformatics},
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	Title = {{rHAT}: fast alignment of noisy long reads with regional hashing},
	Volume = {32},
	Year = {2016}}

@article{Liu:2017aa,
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	Journal = {Bioinformatics},
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	Volume = {33},
	Year = {2017}}

@article{Lin:2017aa,
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	Journal = {Bioinformatics},
	Title = {Kart: a divide-and-conquer algorithm for {NGS} read alignment},
	Year = {2017}}

@article{Li:2013aa,
	Author = {Li, Heng},
	Journal = {arXiv:1303.3997},
	Title = {Aligning sequence reads, clone sequences and assembly contigs with {BWA-MEM}},
	archivePrefix = "arXiv",
	eprint = {1303.3997},
	primaryClass = "q-bio",
	Year = {2013}}

@article{Sovic:2016aa,
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	Journal = {Nat Commun},
	Pages = {11307},
	Title = {Fast and sensitive mapping of nanopore sequencing reads with {GraphMap}},
	Volume = {7},
	Year = {2016}}

@article{Langmead:2012fk,
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	Year = {2012}}

@article{Li:2016aa,
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	Journal = {Bioinformatics},
	Pages = {2103-10},
	Title = {Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences},
	Volume = {32},
	Year = {2016}}

@misc{Suzuki:2016,
	title = {Fast and accurate alignment tool for PacBio and Nanopore long reads},
	author = {Hajime Suzuki},
	journal = {Unpublished},
	howpublished = {\href{https://github.com/ocxtal/minialign}{https://github.com/ocxtal/minialign}},
	year = {2016}}

@misc{Ruan:2016,
	title = {Ultra-fast de novo assembler using long noisy reads},
	author = {Jue Ruan},
	journal = {Unpulished},
	howpublished = {\href{https://github.com/ruanjue/smartdenovo}{https://github.com/ruanjue/smartdenovo}},
	year = {2016}}

@article{Miller:1988aa,
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	Journal = {Bull Math Biol},
	Number = {2},
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	Title = {Sequence comparison with concave weighting functions},
	Volume = {50},
	Year = {1988}}

@article{Gotoh:1990aa,
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	Year = {1990}}

@article{Wu:1996aa,
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@article{Daily:2016aa,
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	Journal = {BMC Bioinformatics},
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	Pages = {81},
	Title = {Parasail: {SIMD C} library for global, semi-global, and local pairwise sequence alignments},
	Volume = {17},
	Year = {2016}}

@article{Sedlazeck169557,
	author = {Sedlazeck, Fritz J and others},
	title = {Accurate detection of complex structural variations using single molecule sequencing},
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	journal = {bioRxiv},
	year = {2017}}

@article{Altschul:1997vn,
	Author = {Altschul, S F and others},
	Journal = {Nucleic Acids Res},
	Pages = {3389-402},
	Title = {Gapped {BLAST} and {PSI-BLAST}: a new generation of protein database search programs},
	Volume = {25},
	Year = {1997}}

@article{Sosic:2017aa,
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	Journal = {Bioinformatics},
	Pages = {1394-1395},
	Title = {Edlib: a {C/C++} library for fast, exact sequence alignment using edit distance},
	Volume = {33},
	Year = {2017}}

@article{Abouelhoda:2005aa,
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@article{Ono:2013aa,
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	Journal = {Bioinformatics},
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	Year = {2013}}

@article {Jain128835,
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	title = {Nanopore sequencing and assembly of a human genome with ultra-long reads},
	year = {2017},
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	publisher = {Cold Spring Harbor Labs Journals},
	journal = {bioRxiv}}

@article{Lau:2016aa,
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	Journal = {Bioinformatics},
	Pages = {3829-3832},
	Title = {LongISLND: in silico sequencing of lengthy and noisy datatypes},
	Volume = {32},
	Year = {2016}}