针对三代测序的比对工具,在原程序基础之上,做一些并行优化
 
 
 
 
 
 
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Heng Li 1bf3ae6752 backup 2017-04-09 15:09:39 -04:00
.gitignore make sdust working with kalloc 2017-04-06 15:51:36 -04:00
Makefile can be compiled 2017-04-07 15:56:10 -04:00
bseq.c index can be compiled; not tested yet 2017-04-07 15:30:30 -04:00
bseq.h index can be compiled; not tested yet 2017-04-07 15:30:30 -04:00
index.c indexing not segfault 2017-04-09 14:17:37 -04:00
kalloc.c Homopolymer-compressed k-mer sketch 2017-04-06 15:37:34 -04:00
kalloc.h Homopolymer-compressed k-mer sketch 2017-04-06 15:37:34 -04:00
kdq.h make sdust working with kalloc 2017-04-06 15:51:36 -04:00
khash.h index can be compiled; not tested yet 2017-04-07 15:30:30 -04:00
kseq.h Homopolymer-compressed k-mer sketch 2017-04-06 15:37:34 -04:00
ksort.h index can be compiled; not tested yet 2017-04-07 15:30:30 -04:00
kthread.c index can be compiled; not tested yet 2017-04-07 15:30:30 -04:00
kthread.h index can be compiled; not tested yet 2017-04-07 15:30:30 -04:00
kvec.h Homopolymer-compressed k-mer sketch 2017-04-06 15:37:34 -04:00
main.c backup 2017-04-09 14:59:39 -04:00
map.c backup 2017-04-09 15:09:39 -04:00
minimap.h is_hpc is a property of the index 2017-04-07 15:42:33 -04:00
misc.c index can be compiled; not tested yet 2017-04-07 15:30:30 -04:00
sdust.c make sdust work (it didn't) 2017-04-07 10:45:50 -04:00
sdust.h make sdust work (it didn't) 2017-04-07 10:45:50 -04:00
sketch.c Homopolymer-compressed k-mer sketch 2017-04-06 15:37:34 -04:00