#include #include #include "minimap.h" int mm_verbose = 3; double mm_realtime0; double cputime() { struct rusage r; getrusage(RUSAGE_SELF, &r); return r.ru_utime.tv_sec + r.ru_stime.tv_sec + 1e-6 * (r.ru_utime.tv_usec + r.ru_stime.tv_usec); } double realtime() { struct timeval tp; struct timezone tzp; gettimeofday(&tp, &tzp); return tp.tv_sec + tp.tv_usec * 1e-6; } #include "ksort.h" #define sort_key_128x(a) ((a).x) KRADIX_SORT_INIT(128x, mm128_t, sort_key_128x, 8) #define sort_key_64(x) (x) KRADIX_SORT_INIT(64, uint64_t, sort_key_64, 8) KSORT_INIT_GENERIC(uint32_t)