Heng Li
|
e6f525edaf
|
r512: option to filter poorly aligned reads
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2017-10-16 10:38:22 -04:00 |
|
Heng Li
|
858213d513
|
r511: fixed wrong primary sam record
|
2017-10-12 23:02:18 -04:00 |
|
Heng Li
|
5ab99eb26e
|
more accurate SAM flag
|
2017-10-05 10:59:38 -04:00 |
|
Heng Li
|
19c39e704f
|
r464: fixed a bug in pairing, due to randomization
|
2017-10-04 13:37:40 -04:00 |
|
Heng Li
|
5babf41a38
|
r462: SAM primary flag not properly set
|
2017-10-04 13:11:29 -04:00 |
|
Heng Li
|
2a1e738a94
|
r461: randomize repetitive hits
|
2017-10-04 13:05:18 -04:00 |
|
Heng Li
|
935a6e6064
|
r450: differentiate exact repeats via mapq
|
2017-09-27 23:51:05 -04:00 |
|
Heng Li
|
8301222174
|
r448: fixed a bug when computing PE quality
|
2017-09-27 21:54:07 -04:00 |
|
Heng Li
|
9541052564
|
r447: paired-end mapping quality
not as good as I would hope...
|
2017-09-27 15:39:25 -04:00 |
|
Heng Li
|
7e0d70bfd3
|
r445: pair coordinate adjustment working
Next: mapq adjustment, which will be tricky...
|
2017-09-27 15:38:18 -04:00 |
|
Heng Li
|
a349d85280
|
r444: changed the way orientation is specified
The old model doesn't work with RF or RR orientation. The new model only works
with paired-end reads. For >2 segments, only FF is supported.
|
2017-09-27 12:33:10 -04:00 |
|
Heng Li
|
55d1e4f638
|
r440: better chain filtering for PE reads
|
2017-09-26 11:03:36 -04:00 |