Heng Li
|
fe6a0bb337
|
r1064: fixed another uninitialized condition
This one should also be harmless. It affects a min value, but that value is not
actually used.
|
2021-06-16 10:16:36 -04:00 |
|
Heng Li
|
3f7147864b
|
r1063: fixed an uninitialized access (#752)
This one is harmless.
|
2021-06-16 09:27:30 -04:00 |
|
Heng Li
|
ce7a59f412
|
Fixed a typo in README
I just hate my butterfly keyboard!
|
2021-05-27 15:43:04 -04:00 |
|
Heng Li
|
15471bd629
|
Release minimap2-2.20 (r1061)
|
2021-05-27 15:26:04 -04:00 |
|
Heng Li
|
ca19463268
|
r1060: safer ways to use -rNUM1,NUM2
|
2021-05-27 10:55:13 -04:00 |
|
Heng Li
|
4f8d1bc360
|
r1059: with --rmq, use the larger bandwidth
|
2021-05-26 23:01:49 -04:00 |
|
Heng Li
|
1776c0c645
|
missing seed.c in setup.py
Ok, I am not going to re-release again...
|
2021-05-26 21:36:09 -04:00 |
|
Heng Li
|
9febf532c1
|
Release minimap2-2.19 (r1057)
|
2021-05-26 21:23:42 -04:00 |
|
Heng Li
|
cec23131e4
|
fixed a python compilation error
Caused by chain.c -> lchain.c
|
2021-05-26 21:20:48 -04:00 |
|
Heng Li
|
ef09ccf104
|
Release minimap2-2.19 (r1055)
|
2021-05-26 21:01:03 -04:00 |
|
Heng Li
|
e74dfd1aa9
|
r1054: fixed a memory leak
|
2021-05-26 12:32:04 -04:00 |
|
Heng Li
|
f31705bb4a
|
r1053: made junceval work with PAF
|
2021-05-26 11:54:46 -04:00 |
|
Heng Li
|
41d7ccb191
|
r1052: default -g to 5k
|
2021-05-24 16:46:16 -04:00 |
|
Heng Li
|
34a41197d7
|
r1051: added two internal parameters
rmq_rescue_size and rmq_rescue_ratio
|
2021-05-24 16:38:45 -04:00 |
|
Heng Li
|
9626b3e716
|
r1050: -r accepts two bandwidths
|
2021-05-24 16:29:21 -04:00 |
|
Heng Li
|
379728726a
|
r1049: removed the long-join heuristics
|
2021-05-24 16:21:40 -04:00 |
|
Heng Li
|
4f91558160
|
r1048: rescue long gaps
|
2021-05-24 16:09:09 -04:00 |
|
Heng Li
|
ec3bc6efd7
|
r1047: make gap penalty proportional to k-mer
closer to the older minimap2
|
2021-05-24 13:18:17 -04:00 |
|
Heng Li
|
8ec8866100
|
Merge branch 'master' into dev-rmq
|
2021-05-23 21:01:04 -04:00 |
|
Heng Li
|
9e7247cff9
|
sync python with recent changes
|
2021-05-23 21:00:15 -04:00 |
Ariel Erijman
|
cd66777bfb
|
small typo
|
2021-05-23 13:09:55 -04:00 |
|
Heng Li
|
5d7d25e92d
|
Merge remote-tracking branch 'origin/master'
|
2021-05-23 13:08:52 -04:00 |
|
Heng Li
|
2a3793bbd2
|
clarify that map-hifi is for HEAD only
Resolves #747
|
2021-05-23 13:08:15 -04:00 |
|
Heng Li
|
f97008a10e
|
Merge branch 'master' into dev-rmq
|
2021-05-20 19:36:33 -04:00 |
Cornelius Roemer
|
10502e2a78
|
Fixed typo in Readme.md
deltion -> deletion
|
2021-05-14 15:38:30 -04:00 |
Don Kirkby
|
4422c0c6f9
|
Typo fix in Python README.
Thanks for sharing minimap2. Here's a little fix.
|
2021-05-14 15:38:12 -04:00 |
|
Heng Li
|
42a11e1d58
|
Changed Travis to Github Actions in README
|
2021-05-10 12:58:25 -04:00 |
|
Heng Li
|
76df351fa8
|
added github action
|
2021-05-10 12:55:58 -04:00 |
|
Heng Li
|
d065d3bead
|
Merge branch 'master' into dev-rmq
|
2021-05-10 12:42:57 -04:00 |
|
Heng Li
|
ac146fe7bc
|
r1035: failed to index under the --frag=yes mode
Resolves #734
|
2021-05-10 12:36:48 -04:00 |
|
Heng Li
|
6c96078ed0
|
r1034: changed multiple defaults; updated manpage
|
2021-05-03 22:51:34 -04:00 |
|
Heng Li
|
bbb4f97e52
|
support RMQ
|
2021-05-03 09:27:04 -04:00 |
|
Heng Li
|
b7f4d8a0f4
|
removed the old minimap2 chaining
|
2021-05-02 18:55:37 -04:00 |
|
Heng Li
|
e81927e7a1
|
prepare to backport unimap/minigraph chaining
|
2021-05-02 18:25:49 -04:00 |
|
Heng Li
|
f7dc5799c5
|
clarify CLR when necessary
|
2021-05-01 15:56:33 -04:00 |
|
Heng Li
|
817cb81cb0
|
Updated README for the HiFi preset
|
2021-05-01 15:47:25 -04:00 |
|
Heng Li
|
0f5608c4a4
|
r1028: backport minigraph -U
|
2021-05-01 15:41:39 -04:00 |
|
Heng Li
|
e8823a3709
|
r1027: renamed hifi to map-hifi; changed default
|
2021-05-01 15:22:51 -04:00 |
|
Heng Li
|
7edeec67b0
|
r1026: fixed bugs in seed sampling add hifi
|
2021-05-01 15:07:56 -04:00 |
|
Heng Li
|
feb92d32ea
|
r1025: seed rescuring
|
2021-04-30 17:33:16 -04:00 |
|
Heng Li
|
cdbd96be0c
|
a bit refactoring for future changes
|
2021-04-30 11:24:53 -04:00 |
|
Heng Li
|
ba52c79024
|
added code of conduct
|
2021-04-22 17:30:30 -04:00 |
|
Heng Li
|
cd9ccfa069
|
r1022: check INDEL lengths in simple cases
|
2021-04-11 22:07:00 -04:00 |
|
Heng Li
|
86b716448c
|
larger window size for longer INDELs
|
2021-04-11 16:08:29 -04:00 |
|
Heng Li
|
9ab95be1bb
|
update END when it is not there
|
2021-04-11 12:59:21 -04:00 |
|
Heng Li
|
b51e859945
|
make sure ins/del match
|
2021-04-11 11:47:14 -04:00 |
|
Heng Li
|
a9037dc16c
|
r1018: scripts for SV evaluation
|
2021-04-11 01:08:17 -04:00 |
|
Heng Li
|
9729fa99ad
|
removed mappy.c
|
2021-04-09 13:48:16 -04:00 |
|
Heng Li
|
b6ff332de1
|
Release minimap2-2.18 (r1015)
|
2021-04-09 13:33:34 -04:00 |
|
Heng Li
|
77abafaaf3
|
prepare for release
|
2021-04-09 13:18:56 -04:00 |