Heng Li
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fd14618e61
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no effective changes
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2017-09-20 10:11:05 -04:00 |
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Heng Li
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5caadc28b4
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Merge branch 'master' into sr
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2017-09-19 22:31:14 -04:00 |
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Heng Li
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56014ba3db
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avoid assertion failure given 0-length reads
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2017-09-19 22:30:32 -04:00 |
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Heng Li
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b99c22840f
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r414: avoid assertion failure for 0-length reads
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2017-09-19 22:21:27 -04:00 |
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Heng Li
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c04420698e
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fixed an uninitialized value
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2017-09-19 16:21:21 -04:00 |
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Heng Li
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fb1bcc0084
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early exploration
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2017-09-19 16:18:28 -04:00 |
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Heng Li
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11081c6c27
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r411: refactored kalloc for clarity
The new version is closer to K&R's original implementation.
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2017-09-18 19:49:15 -04:00 |
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Heng Li
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60485790b4
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updated version number in README
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2017-09-17 20:25:54 -04:00 |
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Heng Li
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ea5a0cd17d
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Release minimap2-2.2 (r409)
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2017-09-17 20:08:47 -04:00 |
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Heng Li
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ffff953e2c
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added python version badge
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2017-09-17 17:15:55 -04:00 |
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Heng Li
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48705e9bfa
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don't build for python-3.0 (unavailable in travis)
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2017-09-17 17:07:42 -04:00 |
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Heng Li
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cf93e5c0a1
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more functional minimap2.py; added categories
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2017-09-17 17:06:39 -04:00 |
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Heng Li
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0b660c70e2
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syntax error
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2017-09-17 16:02:06 -04:00 |
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Heng Li
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5715c423ff
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exposed timer and verbose-level to mappy
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2017-09-17 15:21:36 -04:00 |
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Heng Li
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c8a019fae8
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exposed fasta/q reader to mappy
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2017-09-17 14:41:59 -04:00 |
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Heng Li
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e9c57f6d8b
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r402: exposed kseq (for API in mappy later)
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2017-09-17 13:09:16 -04:00 |
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Heng Li
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3edf2a9130
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renamed mm2-lite.py to minimap2.py
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2017-09-17 09:41:37 -04:00 |
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Heng Li
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89151b2588
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added python 3.6 test
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2017-09-17 00:55:31 -04:00 |
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Heng Li
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cc0a538bd3
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try python3 in travis
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2017-09-17 00:49:16 -04:00 |
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Heng Li
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e9e86f5a48
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try python build again
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2017-09-17 00:46:39 -04:00 |
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Heng Li
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c0779f0359
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revert to the old travis
can't get cython working...
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2017-09-17 00:40:18 -04:00 |
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Heng Li
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875ea06302
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install cython with travis
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2017-09-17 00:37:09 -04:00 |
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Heng Li
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2c7007a11b
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try again
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2017-09-17 00:31:15 -04:00 |
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Heng Li
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fc87b767ba
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travis for python (test)
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2017-09-17 00:28:34 -04:00 |
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Heng Li
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dba8b50ee9
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change python version to rc1
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2017-09-17 00:08:54 -04:00 |
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Heng Li
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d5012a1b17
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this is embarrassing: rename again to mappy
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2017-09-17 00:05:30 -04:00 |
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Heng Li
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eaaf53c9b8
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bumped version number
due to conflict with PyPI (already uploaded)
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2017-09-16 23:51:49 -04:00 |
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Heng Li
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ef46a8aed4
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remaining minimap2=>mmappy in doc
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2017-09-16 23:49:02 -04:00 |
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Heng Li
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28fd3d63fd
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renamed module name from minimap2 to mmappy
minimap2 clashed with minimap2 from conda
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2017-09-16 23:29:41 -04:00 |
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Heng Li
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06b79c4a52
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Merge branch 'master' of github.com:lh3/minimap2
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2017-09-16 22:53:34 -04:00 |
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Heng Li
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8cdaae0935
|
fixed a few typos
eh... a missing fix
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2017-09-16 22:53:24 -04:00 |
|
Heng Li
|
38aa9aa9a7
|
eh... a missing fix
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2017-09-16 22:52:52 -04:00 |
|
Heng Li
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f8cb865ec5
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fixed a few typos
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2017-09-16 22:52:26 -04:00 |
|
Heng Li
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1d90742b35
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fixed hyperlink
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2017-09-16 22:46:30 -04:00 |
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Heng Li
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5103cea7d3
|
load python README.rst into setup.py
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2017-09-16 22:43:52 -04:00 |
|
Heng Li
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7da9a08a6f
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reformat
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2017-09-16 22:36:19 -04:00 |
|
Heng Li
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ddc2c6f279
|
change to rst for PyPI
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2017-09-16 22:29:52 -04:00 |
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Heng Li
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7e98b18ba2
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for python3 compatibility
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2017-09-16 20:37:49 -04:00 |
|
Heng Li
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3544c60c71
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allow to test if index is present
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2017-09-16 20:09:17 -04:00 |
|
Heng Li
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6b66ec6167
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minor
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2017-09-16 19:55:33 -04:00 |
|
Heng Li
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cb7fb77bb9
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python documentation
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2017-09-16 19:50:52 -04:00 |
|
Heng Li
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322e5a16e5
|
minor tweaks to python
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2017-09-16 18:11:43 -04:00 |
|
Heng Li
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10bd4079d1
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fixed a bug on rev strand; added example
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2017-09-16 17:51:13 -04:00 |
|
Heng Li
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b22703a354
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improvement to the python binding
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2017-09-16 11:14:01 -04:00 |
|
Heng Li
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7e34bea7ab
|
minor
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2017-09-16 09:30:00 -04:00 |
|
Heng Li
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c07f9f9a49
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r372: default mm_verbose to 1, and change in main
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2017-09-16 09:14:34 -04:00 |
|
Heng Li
|
446bde214d
|
first python version
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2017-09-16 08:44:47 -04:00 |
|
Heng Li
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5966e5d6e4
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make reader_open() work even if idxopt is NULL
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2017-09-15 11:29:49 -04:00 |
|
Heng Li
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14b853499f
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r369: updated example with the latest API
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2017-09-14 22:44:10 -04:00 |
|
Heng Li
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75ff7ceec5
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r368: API documentation
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2017-09-14 22:23:04 -04:00 |