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8 Commits (fc24c8a34838e594439fbaf28e583b93522207e7)

Author SHA1 Message Date
Heng Li fc24c8a348 r1169: improved kexpand compatibility 2023-04-21 10:53:23 -04:00
Chris Seymour e68d868806
use updated kalloc macros (#1051) 
* use updated kalloc macros

* review

* get the reference

* store the reference

* last one
 2023-04-21 10:45:53 -04:00
Heng Li c41518ae85 r1166: sync kalloc with miniwfa and miniprot 2023-04-19 21:38:47 -04:00
Heng Li e81927e7a1 prepare to backport unimap/minigraph chaining 2021-05-02 18:25:49 -04:00
Heng Li 7fc03b0c32 r953: krealloc is buggy 
Its use in minimap2 didn't trigger the bug, so the older minimap2 is still ok.
 2019-07-18 09:13:30 -04:00
Heng Li f6608fe99c r620: revamped thread-local memory management 
* Don't preallocate sdust_buf or minizer list. kalloc should be fast enough -
  benchmarks needed to confirm.

* Fixed a memory leak caused by divergence estimate (post v2.5)

* Reset the kalloc buffer after mapping a long query. This reduces peak memory
  when large chunks of memory are allocated, at the cost of performance, though.
 2017-12-11 12:11:10 -05:00
Heng Li 11081c6c27 r411: refactored kalloc for clarity 
The new version is closer to K&R's original implementation.
 2017-09-18 19:49:15 -04:00
Heng Li 01baa847a1 Homopolymer-compressed k-mer sketch 2017-04-06 15:37:34 -04:00