Heng Li
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0bf97a367b
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r755: junceval to only evaluate chromosomes
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2018-03-24 23:10:06 -04:00 |
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Heng Li
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1c504d72e4
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r754: option to only change name
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2018-03-23 12:27:11 -04:00 |
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Heng Li
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242ff4e91d
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r745: junceval - recognize "-" as file name
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2018-03-15 12:51:46 -04:00 |
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Heng Li
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77ebd479f4
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r743: added VCF output to "call"
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2018-03-12 21:51:31 -04:00 |
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Heng Li
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ccaf12e1a2
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r734: removed debugging print in call()
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2018-03-09 23:46:21 -05:00 |
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Heng Li
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70428ca3a8
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speedup tag parsing for sam2paf
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2018-03-02 10:17:55 -05:00 |
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Heng Li
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9aea79d621
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faster tag parsing
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2018-03-02 10:09:14 -05:00 |
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Heng Li
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1770988627
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make calling work with sam2paf output
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2018-03-02 10:03:06 -05:00 |
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Heng Li
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2bfdad34bb
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minor cleanup to last commit
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2018-03-02 01:07:37 -05:00 |
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Heng Li
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953766cedd
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generate cs; not carefully tested
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2018-03-02 00:14:55 -05:00 |
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Heng Li
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dc61301d9f
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sam2paf cleanup
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2018-03-01 21:58:12 -05:00 |
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Heng Li
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e1f18690f6
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paftools-r713: fixed bug for cov1 regions
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2018-02-16 12:20:46 -05:00 |
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Heng Li
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874b8c4795
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rework misc/README; progressing but unfinished
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2018-02-12 22:06:05 -05:00 |
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Heng Li
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f66de7df59
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updated paftools revision number to r702
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2018-02-12 11:39:04 -05:00 |
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Heng Li
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fbbd4e0968
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changed output messages for clarity
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2018-02-12 11:32:32 -05:00 |
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Heng Li
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8c89ba005e
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merged cnt-feat into paftools
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2018-02-12 11:29:42 -05:00 |
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Heng Li
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50775a1e6f
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added liftOver
tested on a few toy examples
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2018-02-12 11:12:23 -05:00 |
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Heng Li
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87cf650168
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r697: fixed wrong #mapped reads in junceval
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2018-02-09 18:45:57 -05:00 |
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Heng Li
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42dab6319b
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don't call SNPs involving 'n'
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2018-02-09 13:27:17 -05:00 |
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Heng Li
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8428809369
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convert MUMmer's delta to PAF
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2018-02-09 12:14:28 -05:00 |
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Heng Li
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642af5591e
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merged intron-eval into paftools
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2018-02-09 11:07:14 -05:00 |
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Heng Li
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2025a6279a
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merged gff2bed and mapstat to paftools
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2018-02-09 10:47:12 -05:00 |
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Heng Li
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3465b04724
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merged a few converters to paftools
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2018-02-09 10:23:30 -05:00 |
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Heng Li
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66c5e71fa8
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merging scripts into one long script
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2018-02-09 10:00:35 -05:00 |