Heng Li
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ee4cd089f7
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r763: fine control long join flank len (#128)
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2018-03-29 14:16:58 -04:00 |
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Heng Li
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2d7ec75d50
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Release minimap2-2.10 (r761)
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2018-03-27 11:45:44 -04:00 |
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Heng Li
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7938ed4893
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fixed two mappy warnings
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2018-03-26 15:12:54 -04:00 |
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Heng Li
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4740423afa
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Merge remote-tracking branch 'origin/master'
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2018-03-26 14:37:17 -04:00 |
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Heng Li
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1776311a9b
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updated cookbook
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2018-03-26 14:37:02 -04:00 |
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Heng Li
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c1a3e05cb0
|
Merge pull request #138 from zingdle/patch-1
Fix typo in README.md
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2018-03-26 07:50:39 -04:00 |
zingdle
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ecb6703d4a
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Update README.md
Fix typo.
TD;DR -> TL;DR
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2018-03-26 14:54:52 +08:00 |
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Heng Li
|
0bf97a367b
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r755: junceval to only evaluate chromosomes
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2018-03-24 23:10:06 -04:00 |
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Heng Li
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1c504d72e4
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r754: option to only change name
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2018-03-23 12:27:11 -04:00 |
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Heng Li
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5ef9580b17
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r753: change bandwidth in ava-ont to 2000bp
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2018-03-23 10:15:23 -04:00 |
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Heng Li
|
08bd2123b6
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r752: option to copy comments to output (#136)
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2018-03-23 10:04:33 -04:00 |
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Heng Li
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8766d286df
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r751: optionally output MD (#118)
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2018-03-22 14:15:33 -04:00 |
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Heng Li
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623b5d9d48
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r750: check puts() return (#132 & #103)
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2018-03-22 11:31:58 -04:00 |
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Heng Li
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18659118cd
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r749: don't print version etc at low verbose
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2018-03-22 11:10:55 -04:00 |
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Heng Li
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d1050f4eaf
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r748: optionally to use system getopt() (#134)
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2018-03-19 11:18:26 -04:00 |
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Heng Li
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b81d45510e
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Revision v2
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2018-03-16 11:18:06 -04:00 |
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Heng Li
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d135feb1a5
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response to reviewers' comments, round 2
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2018-03-15 21:59:57 -04:00 |
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Heng Li
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242ff4e91d
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r745: junceval - recognize "-" as file name
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2018-03-15 12:51:46 -04:00 |
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Heng Li
|
7a0c1316ce
|
added more examples to cookbook
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2018-03-12 22:24:22 -04:00 |
|
Heng Li
|
77ebd479f4
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r743: added VCF output to "call"
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2018-03-12 21:51:31 -04:00 |
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Heng Li
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e3f226a9d9
|
working on section "Full-Genome Alignment"
found an apparent bug in paftools.js call. To debug...
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2018-03-12 16:12:18 -04:00 |
|
Heng Li
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bdc615c1d4
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r741: added --min-occ-floor to improve #107
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2018-03-12 14:32:27 -04:00 |
|
Heng Li
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ad1beaf255
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backup; not finished
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2018-03-12 13:20:25 -04:00 |
|
Heng Li
|
de0480ac5b
|
finished section "Read Overlap"
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2018-03-12 13:05:51 -04:00 |
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Heng Li
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f2866533a8
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finished "mapping genomic reads"
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2018-03-12 12:50:21 -04:00 |
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Heng Li
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0173850ef0
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don't use bullets - they are hard to read
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2018-03-12 12:42:13 -04:00 |
|
Heng Li
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acea3594fb
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updated cookbook
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2018-03-12 12:39:57 -04:00 |
|
Heng Li
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f78a247749
|
Started to work on a cookbook
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2018-03-12 12:00:44 -04:00 |
|
Heng Li
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ccaf12e1a2
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r734: removed debugging print in call()
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2018-03-09 23:46:21 -05:00 |
|
Heng Li
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96b132c97d
|
fixed a bug/typo in Aligner.seq() (#126)
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2018-03-08 19:12:12 -05:00 |
|
Heng Li
|
70428ca3a8
|
speedup tag parsing for sam2paf
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2018-03-02 10:17:55 -05:00 |
|
Heng Li
|
9aea79d621
|
faster tag parsing
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2018-03-02 10:09:14 -05:00 |
|
Heng Li
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1770988627
|
make calling work with sam2paf output
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2018-03-02 10:03:06 -05:00 |
|
Heng Li
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2bfdad34bb
|
minor cleanup to last commit
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2018-03-02 01:07:37 -05:00 |
|
Heng Li
|
953766cedd
|
generate cs; not carefully tested
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2018-03-02 00:14:55 -05:00 |
|
Heng Li
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dc61301d9f
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sam2paf cleanup
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2018-03-01 21:58:12 -05:00 |
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Heng Li
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19e05a099d
|
for clarity
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2018-03-01 18:25:29 -05:00 |
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Heng Li
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0238caa8b1
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clarify minimap2 not working for >2Gbp seq #129
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2018-03-01 18:23:40 -05:00 |
|
Heng Li
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a22ebb9836
|
use SSE compiler flags more precisely (#127)
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2018-02-26 09:51:01 -05:00 |
|
Heng Li
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eeb314edd6
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Release minimap2-2.9 (r720)
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2018-02-24 09:31:09 -05:00 |
|
Heng Li
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83c57a9d98
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r719: fixed bad memory access
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2018-02-23 17:27:41 -05:00 |
|
Heng Li
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24a4808826
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r718: retrieve sequence from the index
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2018-02-23 10:18:26 -05:00 |
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Heng Li
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29ed675ee5
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bugfix: in-place revcomp() not working
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2018-02-20 11:05:54 -05:00 |
|
Heng Li
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7dc7097208
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added reverse complement
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2018-02-20 09:41:25 -05:00 |
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Heng Li
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f434653432
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added peakrss(); not used for now
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2018-02-17 20:40:31 -05:00 |
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Heng Li
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090361c25b
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fixed a typo in mappy (#117)
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2018-02-16 21:10:57 -05:00 |
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Heng Li
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e1f18690f6
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paftools-r713: fixed bug for cov1 regions
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2018-02-16 12:20:46 -05:00 |
|
Heng Li
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54a42aafe5
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keep documents in sync
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2018-02-15 17:21:09 -05:00 |
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Heng Li
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8fc5f8dc90
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r711: assign proper mapq to primary inversions
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2018-02-15 14:34:59 -05:00 |
|
Heng Li
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a0d62519c1
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r710: fixed incorrect inversion coordinate (#112)
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2018-02-15 14:23:42 -05:00 |