Heng Li
|
6a82a21dee
|
r361: improved mapq for short reads
|
2017-09-13 15:32:39 -04:00 |
|
Heng Li
|
240f6caaff
|
backup manuscript
|
2017-08-24 22:05:14 +08:00 |
|
Heng Li
|
ce859dbe1c
|
evaluate introns
this simplies the metrics
|
2017-08-20 21:54:59 +08:00 |
|
Heng Li
|
a4c41f64a5
|
the final version
to be replaced by intron-eval
|
2017-08-20 21:54:35 +08:00 |
|
Heng Li
|
5ed2faf270
|
minor tuning to the matching rules
|
2017-08-19 16:21:49 +08:00 |
|
Heng Li
|
2d11aaa830
|
option to print all exons for debugging
|
2017-08-12 10:04:16 -04:00 |
|
Heng Li
|
30b8cb4672
|
option to print correct exons
|
2017-08-11 17:50:21 -04:00 |
|
Heng Li
|
0c1760bc86
|
bugfix; print errors; better rules
|
2017-08-11 16:28:52 -04:00 |
|
Heng Li
|
a99358bc3d
|
r282: reduced intron cost; added eval script
|
2017-08-11 00:06:01 -04:00 |
|
Heng Li
|
5b10667967
|
sim-eval.js to support mason2 read names and SAM
|
2017-08-07 13:28:33 -04:00 |
|
Heng Li
|
bd1541dce1
|
renamed simulation-related scripts
|
2017-08-07 13:26:25 -04:00 |
|
Heng Li
|
1597f2b030
|
convert mason2 SAM to fastq
|
2017-08-07 12:45:34 -04:00 |
|
Heng Li
|
3217178d4a
|
fixed k8 download page
|
2017-08-04 14:53:00 -04:00 |
|
Heng Li
|
b40598fa91
|
added paf2aln.js example
|
2017-08-04 14:51:33 -04:00 |
|
Heng Li
|
269b8661b9
|
minor clarification
|
2017-08-04 14:49:25 -04:00 |
|
Heng Li
|
890d7bbd5b
|
added README for misc scripts
|
2017-08-04 14:46:31 -04:00 |
|
Heng Li
|
1aca0d5098
|
copied sam2paf.js here for completeness
|
2017-08-04 14:44:37 -04:00 |
|
Heng Li
|
68d99f0edb
|
Merge branch 'cs-tag' into dev
|
2017-08-04 14:31:46 -04:00 |
|
Heng Li
|
fd66ab5413
|
blast-like output working
|
2017-08-04 14:31:21 -04:00 |
|
Heng Li
|
71f82759af
|
convert paf to maf
|
2017-08-04 13:05:46 -04:00 |
|
Heng Li
|
8b1e36c609
|
minor tweaks to the evaluation script
|
2017-08-01 13:52:29 -04:00 |
|
Heng Li
|
ebbe9c1eb8
|
r219: fixed a bug caused by skipping tandem seeds
|
2017-07-28 14:06:56 -04:00 |
|
Heng Li
|
8b08a2ec41
|
added first-only and all-primary modes to eval
|
2017-07-26 19:32:26 -04:00 |
|
Heng Li
|
9f728dd96a
|
tunable overlap ratio
|
2017-07-26 18:30:29 -04:00 |
|
Heng Li
|
323293fbda
|
changed the way mapq is counted
|
2017-07-26 14:20:31 -04:00 |
|
Heng Li
|
bd33bed455
|
make output better
|
2017-07-26 12:03:42 -04:00 |
|
Heng Li
|
a8ad53ee81
|
evaluating read mapping for pbsim2fa reads
More functionality to be added later
|
2017-07-26 11:17:34 -04:00 |
|
Heng Li
|
4bd7ebc39c
|
convert pbsim .maf to fasta
|
2017-07-25 13:54:58 -04:00 |
|
Heng Li
|
34ed85d46a
|
optionally print the postions of long indels
|
2017-07-08 20:16:25 -04:00 |
|
Heng Li
|
2f11a63b22
|
script to collect alignment stats
|
2017-07-08 20:01:36 -04:00 |