mbrcic
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66db9da7d8
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changed preprocessor conditionals for SIMDe
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2020-04-22 19:50:59 +02:00 |
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mbrcic
|
f47e8a525e
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SIMDe made optional. Include paths changes for SIMDe.
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2020-04-21 01:08:32 +02:00 |
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mbrcic
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9e6fdd376b
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Changed sse2neon with SIMDe. Added building non-SIMD version.
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2020-04-20 18:28:06 +02:00 |
Heng Li
|
7e6e8ca73f
|
r792: fixed -Wextra warnings and resolved #184
|
2018-06-19 15:26:58 -04:00 |
|
Heng Li
|
abe989e355
|
the previous fix on int overflow is incomplete
|
2018-05-11 10:12:57 -04:00 |
|
Heng Li
|
10c6dd2551
|
r773: fixed an integer overflow
|
2018-05-11 10:01:23 -04:00 |
|
Heng Li
|
734ac379bb
|
r770: matching N bases not working properly (#155)
|
2018-04-30 19:55:23 -04:00 |
|
Heng Li
|
7345621759
|
r499: end bonus working; DP region needs improve!
|
2017-10-11 00:14:25 -04:00 |
|
Heng Li
|
198849a716
|
r491: an ambiguous base costs the same as gap ext
|
2017-10-09 09:59:42 -04:00 |
|
Heng Li
|
46e8b6a4f9
|
r338: portable CPU dispatch, which is the default
working with gcc, icc, clang and msvc.
|
2017-09-03 20:29:24 -04:00 |
|
Heng Li
|
3c997ca016
|
r337: support CPU dispatch for gcc-4.8+
using __builtin_cpu_supports()
|
2017-09-03 14:29:49 -04:00 |
|
Heng Li
|
993a2bb521
|
r301: separate introns from deletions
When an intron is adjacent to a deletion, the old code count both as introns,
which lead to an inaccurate exon boundary.
|
2017-08-18 15:31:15 +08:00 |
|
Heng Li
|
61eef0575c
|
separate out spliced alignment; not right yet
|
2017-08-12 18:54:32 -04:00 |
|
Heng Li
|
163fa36ee6
|
r281: don't open long gaps on query
|
2017-08-10 15:04:59 -04:00 |
|
Heng Li
|
4badf2fcbf
|
avoid wasted memory allocation for backtrack
|
2017-08-08 11:29:46 -04:00 |
|
Heng Li
|
5934d68772
|
r229: a new way to prevent out-of-band backtrack
|
2017-07-29 23:52:30 -04:00 |
|
Heng Li
|
470021fd27
|
r189: sync with ksw2 (no effective changes)
|
2017-07-19 09:28:25 -04:00 |
|
Heng Li
|
f42790398d
|
fixed a band boundary bug in ksw2
|
2017-07-16 17:52:57 -04:00 |
|
Heng Li
|
cc554aee43
|
r159: use two-piece gap penalty
|
2017-07-08 10:26:00 -04:00 |