Heng Li
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cdc2a1e29f
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r92: fixed a bug for overlapping alignment
On the PBcR example E. coli reads, miniasm gives one circular unitig.
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2017-06-27 22:03:31 -04:00 |
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Heng Li
|
51057ab673
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expose scoring
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2017-06-27 21:37:25 -04:00 |
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Heng Li
|
533150d49d
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r90: revert default band width to 1000
10000 is excessively tolerant with bad hits.
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2017-06-27 20:29:39 -04:00 |
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Heng Li
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fa80177e58
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r89: added minimal number of minimizer counts
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2017-06-27 18:43:15 -04:00 |
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Heng Li
|
8977f07269
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r88: fixed an out-of-boundary bug in ksw2
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2017-06-27 14:50:31 -04:00 |
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Heng Li
|
42283ef10c
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r87: fixed a bug in ksw2
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2017-06-27 13:29:48 -04:00 |
|
Heng Li
|
c02ff4662c
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r85: two-round z-drop
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2017-06-27 10:36:24 -04:00 |
|
Heng Li
|
99c57b86c5
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r79: drop bad hits
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2017-06-26 15:28:04 -04:00 |
|
Heng Li
|
5b614ae828
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r78: fixed a split bug
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2017-06-26 14:45:23 -04:00 |
|
Heng Li
|
de54c9dac2
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r77: fixed an index loading bug (offset not set)
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2017-06-26 13:56:25 -04:00 |
|
Heng Li
|
10644f2165
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r76: missing header file
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2017-06-26 12:36:37 -04:00 |
|
Heng Li
|
4b8e88a5f4
|
use long options
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2017-06-26 12:31:36 -04:00 |
|
Heng Li
|
640b1a1727
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command-line option to control CIGAR output
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2017-06-26 11:41:09 -04:00 |
|
Heng Li
|
b1077ff14c
|
sam output
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2017-06-25 22:05:20 -04:00 |
|
Heng Li
|
72dfb0c99e
|
fixed a bug in ksw2
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2017-06-25 10:22:13 -04:00 |
|
Heng Li
|
b04e4b9215
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r36: bring back primary; don't output all mappings
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2017-06-08 15:28:19 -04:00 |
|
Heng Li
|
19e43571c1
|
r34: removed a bit unused code
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2017-06-07 14:35:57 -04:00 |
|
Heng Li
|
d816e48fce
|
fixed a bug in chaining
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2017-06-06 14:33:43 -04:00 |
|
Heng Li
|
6d4348db44
|
dp chaining mostly works, but fails sometimes
which means there are bugs that need to be fixed
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2017-06-06 14:19:50 -04:00 |
|
Heng Li
|
1a9fc04cf0
|
backup
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2017-06-06 10:16:33 -04:00 |
|
Heng Li
|
acc7382a30
|
backup
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2017-06-04 16:09:45 -04:00 |
|
Heng Li
|
06adabd0dc
|
clean bill from valgrind
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2017-05-04 12:44:49 +08:00 |
|
Heng Li
|
f2ae8eb670
|
mostly debugging code
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2017-05-01 16:50:09 +08:00 |
|
Heng Li
|
7b7fabef4d
|
added idx_stat
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2017-04-26 22:52:28 +08:00 |
|
Heng Li
|
de367a340c
|
compilable again
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2017-04-26 19:36:46 +08:00 |
|
Heng Li
|
56723ad580
|
moved `sum_len` out of the index
as it can be inferred.
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2017-04-19 11:06:24 -04:00 |
|
Heng Li
|
f35e152e99
|
fixed a few memory leaks
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2017-04-13 23:05:19 -04:00 |
|
Heng Li
|
79c9478f46
|
backup
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2017-04-09 14:59:39 -04:00 |
|
Heng Li
|
8c230563cc
|
can be compiled
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2017-04-07 15:56:10 -04:00 |
|
Heng Li
|
f5cdd3f72f
|
is_hpc is a property of the index
|
2017-04-07 15:42:33 -04:00 |