Heng Li
|
c02ff4662c
|
r85: two-round z-drop
|
2017-06-27 10:36:24 -04:00 |
|
Heng Li
|
99c57b86c5
|
r79: drop bad hits
|
2017-06-26 15:28:04 -04:00 |
|
Heng Li
|
5b614ae828
|
r78: fixed a split bug
|
2017-06-26 14:45:23 -04:00 |
|
Heng Li
|
de54c9dac2
|
r77: fixed an index loading bug (offset not set)
|
2017-06-26 13:56:25 -04:00 |
|
Heng Li
|
10644f2165
|
r76: missing header file
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2017-06-26 12:36:37 -04:00 |
|
Heng Li
|
4b8e88a5f4
|
use long options
|
2017-06-26 12:31:36 -04:00 |
|
Heng Li
|
640b1a1727
|
command-line option to control CIGAR output
|
2017-06-26 11:41:09 -04:00 |
|
Heng Li
|
b1077ff14c
|
sam output
|
2017-06-25 22:05:20 -04:00 |
|
Heng Li
|
72dfb0c99e
|
fixed a bug in ksw2
|
2017-06-25 10:22:13 -04:00 |
|
Heng Li
|
b04e4b9215
|
r36: bring back primary; don't output all mappings
|
2017-06-08 15:28:19 -04:00 |
|
Heng Li
|
19e43571c1
|
r34: removed a bit unused code
|
2017-06-07 14:35:57 -04:00 |
|
Heng Li
|
d816e48fce
|
fixed a bug in chaining
|
2017-06-06 14:33:43 -04:00 |
|
Heng Li
|
6d4348db44
|
dp chaining mostly works, but fails sometimes
which means there are bugs that need to be fixed
|
2017-06-06 14:19:50 -04:00 |
|
Heng Li
|
1a9fc04cf0
|
backup
|
2017-06-06 10:16:33 -04:00 |
|
Heng Li
|
acc7382a30
|
backup
|
2017-06-04 16:09:45 -04:00 |
|
Heng Li
|
06adabd0dc
|
clean bill from valgrind
|
2017-05-04 12:44:49 +08:00 |
|
Heng Li
|
f2ae8eb670
|
mostly debugging code
|
2017-05-01 16:50:09 +08:00 |
|
Heng Li
|
7b7fabef4d
|
added idx_stat
|
2017-04-26 22:52:28 +08:00 |
|
Heng Li
|
de367a340c
|
compilable again
|
2017-04-26 19:36:46 +08:00 |
|
Heng Li
|
56723ad580
|
moved `sum_len` out of the index
as it can be inferred.
|
2017-04-19 11:06:24 -04:00 |
|
Heng Li
|
f35e152e99
|
fixed a few memory leaks
|
2017-04-13 23:05:19 -04:00 |
|
Heng Li
|
79c9478f46
|
backup
|
2017-04-09 14:59:39 -04:00 |
|
Heng Li
|
8c230563cc
|
can be compiled
|
2017-04-07 15:56:10 -04:00 |
|
Heng Li
|
f5cdd3f72f
|
is_hpc is a property of the index
|
2017-04-07 15:42:33 -04:00 |