Heng Li
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c02ff4662c
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r85: two-round z-drop
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2017-06-27 10:36:24 -04:00 |
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Heng Li
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5b614ae828
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r78: fixed a split bug
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2017-06-26 14:45:23 -04:00 |
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Heng Li
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de54c9dac2
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r77: fixed an index loading bug (offset not set)
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2017-06-26 13:56:25 -04:00 |
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Heng Li
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24d7f7f8b1
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disabled dynamic banding; buggy
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2017-06-25 22:43:15 -04:00 |
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Heng Li
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39083be9ab
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separated formating printing
for SAM in future; and for performance
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2017-06-25 16:13:54 -04:00 |
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Heng Li
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7780ab792a
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removed some comment lines
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2017-06-25 11:53:35 -04:00 |
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Heng Li
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56364200c8
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avoid contained hits due to split
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2017-06-25 11:43:50 -04:00 |
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Heng Li
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f20d550a59
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fixed the NM bug
due to reversed CIGAR
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2017-06-25 11:24:39 -04:00 |
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Heng Li
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b261a4a74b
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zdrop sort of works, but has issues
left and right extensions are different; NM is also wrong
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2017-06-25 10:52:14 -04:00 |
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Heng Li
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72dfb0c99e
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fixed a bug in ksw2
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2017-06-25 10:22:13 -04:00 |
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Heng Li
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ef5dd318ca
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implemented chain splitting; NOT tested!!!
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2017-06-24 22:57:43 -04:00 |
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Heng Li
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aa5881e7bb
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backup
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2017-06-24 22:51:31 -04:00 |
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Heng Li
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d08b58d21f
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minor
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2017-06-24 19:33:59 -04:00 |
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Heng Li
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672782f03a
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simplified hp_len a little
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2017-06-24 19:27:58 -04:00 |
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Heng Li
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2d8fda9586
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an alternative strategy to fix for HPC
it makes the result better, but still not quite right.
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2017-06-24 09:26:24 -04:00 |
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Heng Li
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6088dc11ff
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wrong SW score
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2017-06-23 23:24:49 -04:00 |
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Heng Li
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2987be288c
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output cigar
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2017-06-23 22:53:47 -04:00 |
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Heng Li
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35b84f88c6
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backup
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2017-06-23 22:42:15 -04:00 |
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Heng Li
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523a8832ad
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backup
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2017-06-23 20:57:17 -04:00 |
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Heng Li
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7ed26a4857
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backup
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2017-06-23 19:31:23 -04:00 |
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Heng Li
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d75b5b4e8a
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backup; NOT working yet
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2017-06-23 19:21:47 -04:00 |
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Heng Li
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4fea3d778a
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backup
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2017-06-23 18:57:00 -04:00 |
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Heng Li
|
6c8368c24c
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get the left-extension sequence correctly
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2017-06-23 18:25:47 -04:00 |
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Heng Li
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990f7b0b71
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backup
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2017-06-23 15:13:53 -04:00 |
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Heng Li
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4ae0b46972
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min_ksw_len
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2017-06-23 14:38:28 -04:00 |
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Heng Li
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9cd313eae1
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sequence retrieval working
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2017-06-23 14:11:56 -04:00 |
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Heng Li
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326d91deb0
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backup
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2017-06-23 14:06:00 -04:00 |
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Heng Li
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44cdd18de0
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start to work on alignment
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2017-06-23 13:44:45 -04:00 |