Heng Li
|
61eef0575c
|
separate out spliced alignment; not right yet
|
2017-08-12 18:54:32 -04:00 |
|
Heng Li
|
163fa36ee6
|
r281: don't open long gaps on query
|
2017-08-10 15:04:59 -04:00 |
|
Heng Li
|
5934d68772
|
r229: a new way to prevent out-of-band backtrack
|
2017-07-29 23:52:30 -04:00 |
|
Heng Li
|
d08b7a0c51
|
r227: use local alignment for INV alignment
|
2017-07-29 17:40:53 -04:00 |
|
Heng Li
|
947cf162be
|
update dependency; delete minimap2-lite on clean
|
2017-07-18 14:48:46 -04:00 |
|
Heng Li
|
293a7049f3
|
migrated minimap/example.c here.
|
2017-07-18 14:43:43 -04:00 |
|
Heng Li
|
a1addb2949
|
use -msse4 by default, not -march
|
2017-07-18 13:56:51 -04:00 |
|
Heng Li
|
cc554aee43
|
r159: use two-piece gap penalty
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2017-07-08 10:26:00 -04:00 |
|
Heng Li
|
2e4fd9f1d0
|
r148: revamped regs handling after cigar
|
2017-07-03 10:44:26 -04:00 |
|
Heng Li
|
ecedfe5788
|
code refactoring for mm_reg1_t
|
2017-06-29 19:35:38 -04:00 |
|
Heng Li
|
17944a75c2
|
merge into map.c
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2017-06-29 14:20:14 -04:00 |
|
Heng Li
|
d274e1b743
|
backup
|
2017-06-29 12:58:52 -04:00 |
|
Heng Li
|
cf703655cb
|
optional sse4
|
2017-06-28 22:21:52 -04:00 |
|
Heng Li
|
b56cd790f6
|
enabled kalloc (was a mistake)
Not using kalloc leads to significant malloc overhead.
|
2017-06-26 15:41:55 -04:00 |
|
Heng Li
|
39083be9ab
|
separated formating printing
for SAM in future; and for performance
|
2017-06-25 16:13:54 -04:00 |
|
Heng Li
|
4fea3d778a
|
backup
|
2017-06-23 18:57:00 -04:00 |
|
Heng Li
|
326d91deb0
|
backup
|
2017-06-23 14:06:00 -04:00 |
|
Heng Li
|
44cdd18de0
|
start to work on alignment
|
2017-06-23 13:44:45 -04:00 |
|
Heng Li
|
1a9fc04cf0
|
backup
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2017-06-06 10:16:33 -04:00 |
|
Heng Li
|
8c230563cc
|
can be compiled
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2017-04-07 15:56:10 -04:00 |
|
Heng Li
|
17b57a9af0
|
forgot to link misc.o
|
2017-04-07 15:43:55 -04:00 |
|
Heng Li
|
f5cdd3f72f
|
is_hpc is a property of the index
|
2017-04-07 15:42:33 -04:00 |
|
Heng Li
|
b3bc4911ba
|
index can be compiled; not tested yet
|
2017-04-07 15:30:30 -04:00 |