Heng Li
|
826c8ba892
|
r170: added a debugging flag
something wrong with chaining
|
2017-07-11 14:47:35 -04:00 |
|
Heng Li
|
e07daad7ad
|
r153: sam primary record not set sometimes
|
2017-07-03 13:18:57 -04:00 |
|
Heng Li
|
53c4bf5e4f
|
r149: introduced debugging flags on CLI
|
2017-07-03 11:02:32 -04:00 |
|
Heng Li
|
2e4fd9f1d0
|
r148: revamped regs handling after cigar
|
2017-07-03 10:44:26 -04:00 |
|
Heng Li
|
74d306a596
|
fixed bug when retaining 2ndary aln; still buggy
|
2017-07-02 19:08:30 -04:00 |
|
Heng Li
|
426c2975f6
|
r126: filter by fraction of seed coverage
otherwise we may get too many poor overlap mappings.
|
2017-06-30 22:15:45 -04:00 |
|
Heng Li
|
646a746cdc
|
r122: filter contained aln after DP extension
|
2017-06-30 15:23:30 -04:00 |
|
Heng Li
|
1a903486b9
|
r118: bugfix - regs unsorted before filtering
|
2017-06-30 12:52:28 -04:00 |
|
Heng Li
|
11167f511b
|
r112: output z-drop
|
2017-06-29 22:08:46 -04:00 |
|
Heng Li
|
4cd456b9ba
|
r108: refactoring, move reg1 routines to hit.c
|
2017-06-29 19:44:11 -04:00 |
|
Heng Li
|
ecedfe5788
|
code refactoring for mm_reg1_t
|
2017-06-29 19:35:38 -04:00 |
|
Heng Li
|
d274e1b743
|
backup
|
2017-06-29 12:58:52 -04:00 |
|
Heng Li
|
c8d122bcdb
|
backup
|
2017-06-29 11:11:15 -04:00 |
|
Heng Li
|
cdc2a1e29f
|
r92: fixed a bug for overlapping alignment
On the PBcR example E. coli reads, miniasm gives one circular unitig.
|
2017-06-27 22:03:31 -04:00 |
|
Heng Li
|
fa80177e58
|
r89: added minimal number of minimizer counts
|
2017-06-27 18:43:15 -04:00 |
|
Heng Li
|
b1077ff14c
|
sam output
|
2017-06-25 22:05:20 -04:00 |
|
Heng Li
|
39083be9ab
|
separated formating printing
for SAM in future; and for performance
|
2017-06-25 16:13:54 -04:00 |
|
Heng Li
|
ef5dd318ca
|
implemented chain splitting; NOT tested!!!
|
2017-06-24 22:57:43 -04:00 |
|
Heng Li
|
aa5881e7bb
|
backup
|
2017-06-24 22:51:31 -04:00 |
|
Heng Li
|
44cdd18de0
|
start to work on alignment
|
2017-06-23 13:44:45 -04:00 |
|
Heng Li
|
a2958a4836
|
minor tweaks
|
2017-06-06 15:31:21 -04:00 |
|
Heng Li
|
6d4348db44
|
dp chaining mostly works, but fails sometimes
which means there are bugs that need to be fixed
|
2017-06-06 14:19:50 -04:00 |
|
Heng Li
|
1a9fc04cf0
|
backup
|
2017-06-06 10:16:33 -04:00 |