Heng Li
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eccdb3a1ca
|
r315: added getopt from musl
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2017-09-01 20:20:34 +08:00 |
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Heng Li
|
61eef0575c
|
separate out spliced alignment; not right yet
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2017-08-12 18:54:32 -04:00 |
|
Heng Li
|
163fa36ee6
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r281: don't open long gaps on query
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2017-08-10 15:04:59 -04:00 |
|
Heng Li
|
5934d68772
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r229: a new way to prevent out-of-band backtrack
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2017-07-29 23:52:30 -04:00 |
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Heng Li
|
d08b7a0c51
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r227: use local alignment for INV alignment
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2017-07-29 17:40:53 -04:00 |
|
Heng Li
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947cf162be
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update dependency; delete minimap2-lite on clean
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2017-07-18 14:48:46 -04:00 |
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Heng Li
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293a7049f3
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migrated minimap/example.c here.
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2017-07-18 14:43:43 -04:00 |
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Heng Li
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a1addb2949
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use -msse4 by default, not -march
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2017-07-18 13:56:51 -04:00 |
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Heng Li
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cc554aee43
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r159: use two-piece gap penalty
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2017-07-08 10:26:00 -04:00 |
|
Heng Li
|
2e4fd9f1d0
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r148: revamped regs handling after cigar
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2017-07-03 10:44:26 -04:00 |
|
Heng Li
|
ecedfe5788
|
code refactoring for mm_reg1_t
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2017-06-29 19:35:38 -04:00 |
|
Heng Li
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17944a75c2
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merge into map.c
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2017-06-29 14:20:14 -04:00 |
|
Heng Li
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d274e1b743
|
backup
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2017-06-29 12:58:52 -04:00 |
|
Heng Li
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cf703655cb
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optional sse4
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2017-06-28 22:21:52 -04:00 |
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Heng Li
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b56cd790f6
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enabled kalloc (was a mistake)
Not using kalloc leads to significant malloc overhead.
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2017-06-26 15:41:55 -04:00 |
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Heng Li
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39083be9ab
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separated formating printing
for SAM in future; and for performance
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2017-06-25 16:13:54 -04:00 |
|
Heng Li
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4fea3d778a
|
backup
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2017-06-23 18:57:00 -04:00 |
|
Heng Li
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326d91deb0
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backup
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2017-06-23 14:06:00 -04:00 |
|
Heng Li
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44cdd18de0
|
start to work on alignment
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2017-06-23 13:44:45 -04:00 |
|
Heng Li
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1a9fc04cf0
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backup
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2017-06-06 10:16:33 -04:00 |
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Heng Li
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8c230563cc
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can be compiled
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2017-04-07 15:56:10 -04:00 |
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Heng Li
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17b57a9af0
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forgot to link misc.o
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2017-04-07 15:43:55 -04:00 |
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Heng Li
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f5cdd3f72f
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is_hpc is a property of the index
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2017-04-07 15:42:33 -04:00 |
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Heng Li
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b3bc4911ba
|
index can be compiled; not tested yet
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2017-04-07 15:30:30 -04:00 |