Heng Li
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aa5881e7bb
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backup
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2017-06-24 22:51:31 -04:00 |
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Heng Li
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2d8fda9586
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an alternative strategy to fix for HPC
it makes the result better, but still not quite right.
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2017-06-24 09:26:24 -04:00 |
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Heng Li
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0c274280ae
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output the original score
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2017-06-23 22:56:50 -04:00 |
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Heng Li
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2987be288c
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output cigar
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2017-06-23 22:53:47 -04:00 |
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Heng Li
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35b84f88c6
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backup
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2017-06-23 22:42:15 -04:00 |
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Heng Li
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d75b5b4e8a
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backup; NOT working yet
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2017-06-23 19:21:47 -04:00 |
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Heng Li
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990f7b0b71
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backup
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2017-06-23 15:13:53 -04:00 |
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Heng Li
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4ae0b46972
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min_ksw_len
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2017-06-23 14:38:28 -04:00 |
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Heng Li
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44cdd18de0
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start to work on alignment
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2017-06-23 13:44:45 -04:00 |
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Heng Li
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372698bb23
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disable k-mer intersection for now
My current focus is long-read mapping. This functionality is not needed right now.
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2017-06-11 14:13:41 -04:00 |
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Heng Li
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b04e4b9215
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r36: bring back primary; don't output all mappings
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2017-06-08 15:28:19 -04:00 |
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Heng Li
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6c099bef89
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removed some debugging code
not necessary when we can print PAF
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2017-06-07 14:49:11 -04:00 |
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Heng Li
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be9a7f4e41
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removed the old print code
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2017-06-07 14:24:31 -04:00 |
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Heng Li
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8ad5cfde42
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output PAF
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2017-06-07 14:18:32 -04:00 |
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Heng Li
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c01f2dd757
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fixed a bug
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2017-06-07 11:40:13 -04:00 |
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Heng Li
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c1c946aa67
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fixed memory leaks
though some of them are not really leaks when kalloc is in use.
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2017-06-06 21:45:55 -04:00 |
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Heng Li
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e6adb673f9
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fixed a stupid bug
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2017-06-06 15:45:42 -04:00 |
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Heng Li
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a2958a4836
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minor tweaks
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2017-06-06 15:31:21 -04:00 |
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Heng Li
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6d4348db44
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dp chaining mostly works, but fails sometimes
which means there are bugs that need to be fixed
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2017-06-06 14:19:50 -04:00 |
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Heng Li
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1a9fc04cf0
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backup
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2017-06-06 10:16:33 -04:00 |
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Heng Li
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acc7382a30
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backup
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2017-06-04 16:09:45 -04:00 |
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Heng Li
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949d9be872
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chaining with DP
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2017-05-09 22:20:57 +08:00 |
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Heng Li
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2827c29b48
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minor backup
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2017-05-04 23:22:11 +08:00 |
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Heng Li
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10db6b0434
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wrong HPC
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2017-05-04 17:45:19 +08:00 |
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Heng Li
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06adabd0dc
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clean bill from valgrind
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2017-05-04 12:44:49 +08:00 |
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Heng Li
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7b53f7aa84
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chaining
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2017-05-03 20:47:29 +08:00 |
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Heng Li
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f2ae8eb670
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mostly debugging code
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2017-05-01 16:50:09 +08:00 |
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Heng Li
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2c9f1bce3e
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k-mer thinning apparently working
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2017-04-28 18:24:45 +08:00 |
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Heng Li
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7b7fabef4d
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added idx_stat
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2017-04-26 22:52:28 +08:00 |
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Heng Li
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de367a340c
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compilable again
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2017-04-26 19:36:46 +08:00 |
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Heng Li
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1bf3ae6752
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backup
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2017-04-09 15:09:39 -04:00 |
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Heng Li
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79c9478f46
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backup
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2017-04-09 14:59:39 -04:00 |
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Heng Li
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8c230563cc
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can be compiled
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2017-04-07 15:56:10 -04:00 |