Heng Li
|
6c96078ed0
|
r1034: changed multiple defaults; updated manpage
|
2021-05-03 22:51:34 -04:00 |
|
Heng Li
|
0f5608c4a4
|
r1028: backport minigraph -U
|
2021-05-01 15:41:39 -04:00 |
|
Heng Li
|
e8823a3709
|
r1027: renamed hifi to map-hifi; changed default
|
2021-05-01 15:22:51 -04:00 |
|
Heng Li
|
b6ff332de1
|
Release minimap2-2.18 (r1015)
|
2021-04-09 13:33:34 -04:00 |
|
Heng Li
|
1c4b7e8a48
|
explained --junc-bed in README
|
2021-03-06 19:44:24 -05:00 |
|
Heng Li
|
f995f55610
|
added --mask-len for #659
|
2020-08-21 11:12:50 -04:00 |
|
Heng Li
|
9dceae59a0
|
r972: renamed --alt-diff to --alt-drop
|
2020-01-21 10:33:39 -05:00 |
|
Heng Li
|
eb3ed6993d
|
support ALT mapping
|
2020-01-21 09:17:50 -05:00 |
|
Heng Li
|
040f74102c
|
r965: added --chain-gap-scale for #540
|
2020-01-18 10:29:33 -05:00 |
|
Heng Li
|
e026e18439
|
added the description of "SA" tag. Closes #438
|
2019-07-01 09:18:33 -04:00 |
|
Heng Li
|
7bc87b4175
|
Release minimap2-2.17 (r941)
|
2019-05-04 23:49:17 -04:00 |
|
Heng Li
|
6762368cf0
|
r940: added the splice:hq preset
for high-quality CCS/mRNA splice alignment
|
2019-05-04 14:00:31 -04:00 |
|
Heng Li
|
c2aec88b84
|
r938: added --sam-hit-only; resolved #377
|
2019-04-30 22:40:36 -04:00 |
|
Heng Li
|
49c6d83a8e
|
r934: --junc-bed to read BED12
|
2019-04-28 20:12:28 -04:00 |
|
Heng Li
|
f64e426a5a
|
r933: resume versioning
|
2019-04-28 17:05:37 -04:00 |
|
Heng Li
|
2bb8cbbeef
|
updated manpage
|
2019-04-28 17:02:49 -04:00 |
|
Heng Li
|
169216bfff
|
manpage was wrongly marked as "dirty"
|
2019-02-28 15:58:12 -05:00 |
|
Heng Li
|
6b391e3373
|
Release minimap2-2.16 (r922)
|
2019-02-28 15:49:24 -05:00 |
|
Heng Li
|
55e39c2d30
|
r921: output unmapped reads in full PAF
|
2019-02-27 15:03:19 -05:00 |
|
Heng Li
|
d431dc0181
|
r917: added --max-chain-iter to avoid worst case
Resolves #324
|
2019-02-27 14:41:01 -05:00 |
|
Heng Li
|
1739a260fb
|
r913: output tag "rl", length of unseedable regs
|
2019-02-05 14:19:17 -05:00 |
|
Heng Li
|
8b05880f73
|
r911: option -o to output to file (#319)
|
2019-01-29 10:42:20 -05:00 |
|
Heng Li
|
c404f49569
|
Release minimap2-2.15 (r905)
|
2019-01-10 12:34:45 -05:00 |
|
Heng Li
|
ea2b1c5b2a
|
r894: added --max-qlen to filter out long query
|
2018-12-12 12:27:32 -05:00 |
|
Heng Li
|
128476efc9
|
r891: compute gap-compressed divergence
|
2018-11-24 21:50:49 -05:00 |
|
Heng Li
|
59f23f7579
|
Release minimap2-2.14 (r883)
|
2018-11-06 00:03:16 -05:00 |
|
Heng Li
|
1ede8ca170
|
r877: renamed cap-sw-mat to cap-sw-mem
|
2018-11-05 11:46:38 -05:00 |
|
Heng Li
|
13981404e2
|
r876: skip DP if taking too much RAM (#259)
|
2018-11-05 11:43:10 -05:00 |
|
Heng Li
|
2ceba22a7a
|
fixed a typo in manpage
|
2018-10-28 11:51:02 -04:00 |
|
Heng Li
|
ecb6c5c36c
|
Document --no-pairing (#256)
|
2018-10-23 10:00:21 -04:00 |
|
Heng Li
|
5d5d392c02
|
Release minimap2-2.13 (r850)
|
2018-10-11 13:18:31 -04:00 |
|
Heng Li
|
1077b7ddc8
|
r846: added --hard-mask-level for #244
|
2018-09-27 14:46:26 -04:00 |
|
Heng Li
|
a5eafb75f9
|
Release minimap2-2.12 (r827)
|
2018-08-06 12:44:39 -04:00 |
|
Heng Li
|
5ab6538757
|
r822: added option --no-end-flt
|
2018-08-05 19:42:12 -04:00 |
|
Heng Li
|
395c8d678a
|
r815: fixed a memory leak
|
2018-07-15 22:11:32 -04:00 |
|
Heng Li
|
0517972d02
|
Release minimap2-2.11 (r797)
|
2018-06-21 00:04:08 -04:00 |
|
Heng Li
|
154d2caf5b
|
r784: support the =/X CIGAR operators (#156)
|
2018-05-30 16:11:22 -04:00 |
|
Heng Li
|
734ac379bb
|
r770: matching N bases not working properly (#155)
|
2018-04-30 19:55:23 -04:00 |
|
Heng Li
|
aef7b0744c
|
r768: shortened preset; added dv tag (#25)
Also added asm20 to command line help (#151)
|
2018-04-24 12:48:54 -04:00 |
|
Heng Li
|
2d7ec75d50
|
Release minimap2-2.10 (r761)
|
2018-03-27 11:45:44 -04:00 |
|
Heng Li
|
5ef9580b17
|
r753: change bandwidth in ava-ont to 2000bp
|
2018-03-23 10:15:23 -04:00 |
|
Heng Li
|
08bd2123b6
|
r752: option to copy comments to output (#136)
|
2018-03-23 10:04:33 -04:00 |
|
Heng Li
|
8766d286df
|
r751: optionally output MD (#118)
|
2018-03-22 14:15:33 -04:00 |
|
Heng Li
|
d135feb1a5
|
response to reviewers' comments, round 2
|
2018-03-15 21:59:57 -04:00 |
|
Heng Li
|
bdc615c1d4
|
r741: added --min-occ-floor to improve #107
|
2018-03-12 14:32:27 -04:00 |
|
Heng Li
|
eeb314edd6
|
Release minimap2-2.9 (r720)
|
2018-02-24 09:31:09 -05:00 |
|
Heng Li
|
54a42aafe5
|
keep documents in sync
|
2018-02-15 17:21:09 -05:00 |
|
Heng Li
|
997ab9bb2e
|
Fixed the description of --dual
|
2018-02-01 15:11:51 -05:00 |
|
Heng Li
|
53ce317e59
|
Release minimap2-2.8 (r672)
|
2018-02-01 12:50:20 -05:00 |
|
Heng Li
|
da6947cfa3
|
r671: cleanup command line options
|
2018-01-31 13:59:52 -05:00 |