Heng Li
|
97f97306a4
|
r847: guard against -N0
|
2018-09-27 15:13:44 -04:00 |
|
Heng Li
|
1077b7ddc8
|
r846: added --hard-mask-level for #244
|
2018-09-27 14:46:26 -04:00 |
|
Heng Li
|
c57b59f02f
|
r845: log peak memory
|
2018-09-23 20:27:49 -04:00 |
|
Heng Li
|
c63a33904f
|
r836: fixed an integer overflow
Forgot this one.
|
2018-09-14 23:29:31 -04:00 |
|
Heng Li
|
70b0fede64
|
r835: improved help message. Resolved #232
|
2018-09-14 22:29:25 -04:00 |
|
Heng Li
|
7d80d6de4a
|
r832: fixed outdated -L. Resolved #231 and #233
|
2018-09-14 22:21:33 -04:00 |
|
Heng Li
|
7998fe9906
|
r829: replaced musl's getopt with ketopt
|
2018-09-01 21:18:02 -04:00 |
|
Heng Li
|
3a119d606f
|
r828: --MD to support spliced alignment
|
2018-08-22 10:47:45 -04:00 |
|
Heng Li
|
a5eafb75f9
|
Release minimap2-2.12 (r827)
|
2018-08-06 12:44:39 -04:00 |
|
Heng Li
|
b0f39a1a61
|
r823: mappy to index a single sequence
|
2018-08-05 20:57:05 -04:00 |
|
Heng Li
|
5ab6538757
|
r822: added option --no-end-flt
|
2018-08-05 19:42:12 -04:00 |
|
Heng Li
|
b32296e18f
|
r821: fixed memory when -y is used
|
2018-07-31 15:14:37 -04:00 |
|
Heng Li
|
ff9917a1c4
|
r819: mappy to support cs/MD
|
2018-07-24 23:29:55 -04:00 |
|
Heng Li
|
395c8d678a
|
r815: fixed a memory leak
|
2018-07-15 22:11:32 -04:00 |
|
Heng Li
|
830da7fa27
|
r814: resumed versioning
|
2018-07-15 11:48:14 -04:00 |
|
Heng Li
|
a655cbef86
|
print SAM header; remove tmp files
|
2018-07-15 11:03:18 -04:00 |
|
Heng Li
|
e5277dbf5c
|
code backup
|
2018-07-14 22:52:36 -04:00 |
|
Heng Li
|
1a55227d5a
|
write hits to tmp files (unfinished)
|
2018-07-14 12:15:10 -04:00 |
|
Heng Li
|
a609a07f8c
|
optionally output unmapped query in PAF
|
2018-07-07 10:26:08 -05:00 |
|
Heng Li
|
0517972d02
|
Release minimap2-2.11 (r797)
|
2018-06-21 00:04:08 -04:00 |
|
Heng Li
|
d46e68e6ad
|
r796: don't use ssize_t
|
2018-06-20 12:45:27 -04:00 |
|
Heng Li
|
2584a4149a
|
r295: use -r2000 for ava-ont, NOT for ava-pb
|
2018-06-20 12:24:43 -04:00 |
|
Heng Li
|
66674afd09
|
r794: fixed a bug in seed filtering
|
2018-06-20 10:26:29 -04:00 |
|
Heng Li
|
7e6e8ca73f
|
r792: fixed -Wextra warnings and resolved #184
|
2018-06-19 15:26:58 -04:00 |
|
Heng Li
|
154d2caf5b
|
r784: support the =/X CIGAR operators (#156)
|
2018-05-30 16:11:22 -04:00 |
|
Heng Li
|
a3afeec0b2
|
r783: reverted to r781 (#155)
|
2018-05-30 15:25:34 -04:00 |
|
Heng Li
|
3573784b4d
|
r782: no mask a chain having long ref ovlp (#155)
|
2018-05-30 13:53:45 -04:00 |
|
Heng Li
|
872f300955
|
r781: fixed the buggy heapmerge (resolves #166)
|
2018-05-30 11:55:14 -04:00 |
|
Heng Li
|
9f4309c376
|
r777: avoid skipping too many seeds
|
2018-05-11 10:25:18 -04:00 |
|
Heng Li
|
881b4ca3a2
|
r774: Merge branch 'hot-fix' into fix-long-gap
|
2018-05-11 10:02:17 -04:00 |
|
Heng Li
|
10c6dd2551
|
r773: fixed an integer overflow
|
2018-05-11 10:01:23 -04:00 |
|
Heng Li
|
7ec6721c44
|
r772: option -Y not working
|
2018-05-11 10:00:11 -04:00 |
|
Heng Li
|
734ac379bb
|
r770: matching N bases not working properly (#155)
|
2018-04-30 19:55:23 -04:00 |
|
Heng Li
|
759f8e4ac9
|
r769: filter out seeds breaking long gaps
|
2018-04-24 15:37:37 -04:00 |
|
Heng Li
|
aef7b0744c
|
r768: shortened preset; added dv tag (#25)
Also added asm20 to command line help (#151)
|
2018-04-24 12:48:54 -04:00 |
|
Heng Li
|
372c90ceb5
|
r764: fixed incorrect inversion mapq (#148)
|
2018-04-10 09:11:49 -04:00 |
|
Heng Li
|
ee4cd089f7
|
r763: fine control long join flank len (#128)
|
2018-03-29 14:16:58 -04:00 |
|
Heng Li
|
2d7ec75d50
|
Release minimap2-2.10 (r761)
|
2018-03-27 11:45:44 -04:00 |
|
Heng Li
|
5ef9580b17
|
r753: change bandwidth in ava-ont to 2000bp
|
2018-03-23 10:15:23 -04:00 |
|
Heng Li
|
08bd2123b6
|
r752: option to copy comments to output (#136)
|
2018-03-23 10:04:33 -04:00 |
|
Heng Li
|
8766d286df
|
r751: optionally output MD (#118)
|
2018-03-22 14:15:33 -04:00 |
|
Heng Li
|
623b5d9d48
|
r750: check puts() return (#132 & #103)
|
2018-03-22 11:31:58 -04:00 |
|
Heng Li
|
18659118cd
|
r749: don't print version etc at low verbose
|
2018-03-22 11:10:55 -04:00 |
|
Heng Li
|
d1050f4eaf
|
r748: optionally to use system getopt() (#134)
|
2018-03-19 11:18:26 -04:00 |
|
Heng Li
|
bdc615c1d4
|
r741: added --min-occ-floor to improve #107
|
2018-03-12 14:32:27 -04:00 |
|
Heng Li
|
eeb314edd6
|
Release minimap2-2.9 (r720)
|
2018-02-24 09:31:09 -05:00 |
|
Heng Li
|
83c57a9d98
|
r719: fixed bad memory access
|
2018-02-23 17:27:41 -05:00 |
|
Heng Li
|
24a4808826
|
r718: retrieve sequence from the index
|
2018-02-23 10:18:26 -05:00 |
|
Heng Li
|
8fc5f8dc90
|
r711: assign proper mapq to primary inversions
|
2018-02-15 14:34:59 -05:00 |
|
Heng Li
|
a0d62519c1
|
r710: fixed incorrect inversion coordinate (#112)
|
2018-02-15 14:23:42 -05:00 |