Heng Li
|
f81f37fef1
|
r197: allocate index seq names from kalloc
to reduce malloc() overhead.
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2017-07-24 19:36:05 -04:00 |
|
Heng Li
|
5c4d040b13
|
r191: warning if CLI index opt diff from prebuilt
Also added index testing API (moved from main.c to index.c)
|
2017-07-19 10:25:11 -04:00 |
|
Heng Li
|
71c988f6ab
|
r188: renamed bseq* to mm_bseq*
to avoid naming collisions between minimap2 and bwa/fermi-lite/etc
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2017-07-19 09:26:46 -04:00 |
|
Heng Li
|
a9f089f0aa
|
r131: wrong EOF test; make mb_size <= batch_size
|
2017-07-01 09:26:09 -04:00 |
|
Heng Li
|
41efd03d7a
|
r129: fixed memory leak caused by qualities
|
2017-06-30 23:48:00 -04:00 |
|
Heng Li
|
de54c9dac2
|
r77: fixed an index loading bug (offset not set)
|
2017-06-26 13:56:25 -04:00 |
|
Heng Li
|
44cdd18de0
|
start to work on alignment
|
2017-06-23 13:44:45 -04:00 |
|
Heng Li
|
d816e48fce
|
fixed a bug in chaining
|
2017-06-06 14:33:43 -04:00 |
|
Heng Li
|
6d4348db44
|
dp chaining mostly works, but fails sometimes
which means there are bugs that need to be fixed
|
2017-06-06 14:19:50 -04:00 |
|
Heng Li
|
1a9fc04cf0
|
backup
|
2017-06-06 10:16:33 -04:00 |
|
Heng Li
|
949d9be872
|
chaining with DP
|
2017-05-09 22:20:57 +08:00 |
|
Heng Li
|
7b7fabef4d
|
added idx_stat
|
2017-04-26 22:52:28 +08:00 |
|
Heng Li
|
de367a340c
|
compilable again
|
2017-04-26 19:36:46 +08:00 |
|
Heng Li
|
56723ad580
|
moved `sum_len` out of the index
as it can be inferred.
|
2017-04-19 11:06:24 -04:00 |
|
Heng Li
|
f35e152e99
|
fixed a few memory leaks
|
2017-04-13 23:05:19 -04:00 |
|
Heng Li
|
9947c953cf
|
sort positions in each bucket
|
2017-04-12 13:31:12 -04:00 |
|
Heng Li
|
49b8d23695
|
indexing not segfault
|
2017-04-09 14:17:37 -04:00 |
|
Heng Li
|
f5cdd3f72f
|
is_hpc is a property of the index
|
2017-04-07 15:42:33 -04:00 |
|
Heng Li
|
b3bc4911ba
|
index can be compiled; not tested yet
|
2017-04-07 15:30:30 -04:00 |