Heng Li
|
8ad5cfde42
|
output PAF
|
2017-06-07 14:18:32 -04:00 |
|
Heng Li
|
c01f2dd757
|
fixed a bug
|
2017-06-07 11:40:13 -04:00 |
|
Heng Li
|
77c76c1e14
|
fixed an integer overflow
|
2017-06-06 22:20:45 -04:00 |
|
Heng Li
|
c1c946aa67
|
fixed memory leaks
though some of them are not really leaks when kalloc is in use.
|
2017-06-06 21:45:55 -04:00 |
|
Heng Li
|
e6adb673f9
|
fixed a stupid bug
|
2017-06-06 15:45:42 -04:00 |
|
Heng Li
|
a2958a4836
|
minor tweaks
|
2017-06-06 15:31:21 -04:00 |
|
Heng Li
|
d816e48fce
|
fixed a bug in chaining
|
2017-06-06 14:33:43 -04:00 |
|
Heng Li
|
6d4348db44
|
dp chaining mostly works, but fails sometimes
which means there are bugs that need to be fixed
|
2017-06-06 14:19:50 -04:00 |
|
Heng Li
|
1a9fc04cf0
|
backup
|
2017-06-06 10:16:33 -04:00 |
|
Heng Li
|
acc7382a30
|
backup
|
2017-06-04 16:09:45 -04:00 |
|
Heng Li
|
949d9be872
|
chaining with DP
|
2017-05-09 22:20:57 +08:00 |
|
Heng Li
|
2827c29b48
|
minor backup
|
2017-05-04 23:22:11 +08:00 |
|
Heng Li
|
10db6b0434
|
wrong HPC
|
2017-05-04 17:45:19 +08:00 |
|
Heng Li
|
06adabd0dc
|
clean bill from valgrind
|
2017-05-04 12:44:49 +08:00 |
|
Heng Li
|
7b53f7aa84
|
chaining
|
2017-05-03 20:47:29 +08:00 |
|
Heng Li
|
f2ae8eb670
|
mostly debugging code
|
2017-05-01 16:50:09 +08:00 |
|
Heng Li
|
2c9f1bce3e
|
k-mer thinning apparently working
|
2017-04-28 18:24:45 +08:00 |
|
Heng Li
|
7b7fabef4d
|
added idx_stat
|
2017-04-26 22:52:28 +08:00 |
|
Heng Li
|
de367a340c
|
compilable again
|
2017-04-26 19:36:46 +08:00 |
|
Heng Li
|
56723ad580
|
moved `sum_len` out of the index
as it can be inferred.
|
2017-04-19 11:06:24 -04:00 |
|
Heng Li
|
f35e152e99
|
fixed a few memory leaks
|
2017-04-13 23:05:19 -04:00 |
|
Heng Li
|
9947c953cf
|
sort positions in each bucket
|
2017-04-12 13:31:12 -04:00 |
|
Heng Li
|
1bf3ae6752
|
backup
|
2017-04-09 15:09:39 -04:00 |
|
Heng Li
|
79c9478f46
|
backup
|
2017-04-09 14:59:39 -04:00 |
|
Heng Li
|
49b8d23695
|
indexing not segfault
|
2017-04-09 14:17:37 -04:00 |
|
Heng Li
|
8c230563cc
|
can be compiled
|
2017-04-07 15:56:10 -04:00 |
|
Heng Li
|
17b57a9af0
|
forgot to link misc.o
|
2017-04-07 15:43:55 -04:00 |
|
Heng Li
|
f5cdd3f72f
|
is_hpc is a property of the index
|
2017-04-07 15:42:33 -04:00 |
|
Heng Li
|
b3bc4911ba
|
index can be compiled; not tested yet
|
2017-04-07 15:30:30 -04:00 |
|
Heng Li
|
0f160151c7
|
make sdust work (it didn't)
|
2017-04-07 10:45:50 -04:00 |
|
Heng Li
|
bacb7534d2
|
make sdust working with kalloc
|
2017-04-06 15:51:36 -04:00 |
|
Heng Li
|
01baa847a1
|
Homopolymer-compressed k-mer sketch
|
2017-04-06 15:37:34 -04:00 |
|
Heng Li
|
2bb0839177
|
The original sketch.c from minimap
|
2017-04-05 15:39:55 -04:00 |