Heng Li
|
9cd313eae1
|
sequence retrieval working
|
2017-06-23 14:11:56 -04:00 |
|
Heng Li
|
326d91deb0
|
backup
|
2017-06-23 14:06:00 -04:00 |
|
Heng Li
|
44cdd18de0
|
start to work on alignment
|
2017-06-23 13:44:45 -04:00 |
|
Heng Li
|
b04e4b9215
|
r36: bring back primary; don't output all mappings
|
2017-06-08 15:28:19 -04:00 |
|
Heng Li
|
19e43571c1
|
r34: removed a bit unused code
|
2017-06-07 14:35:57 -04:00 |
|
Heng Li
|
8ad5cfde42
|
output PAF
|
2017-06-07 14:18:32 -04:00 |
|
Heng Li
|
6d4348db44
|
dp chaining mostly works, but fails sometimes
which means there are bugs that need to be fixed
|
2017-06-06 14:19:50 -04:00 |
|
Heng Li
|
1a9fc04cf0
|
backup
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2017-06-06 10:16:33 -04:00 |
|
Heng Li
|
acc7382a30
|
backup
|
2017-06-04 16:09:45 -04:00 |
|
Heng Li
|
7b7fabef4d
|
added idx_stat
|
2017-04-26 22:52:28 +08:00 |
|
Heng Li
|
de367a340c
|
compilable again
|
2017-04-26 19:36:46 +08:00 |
|
Heng Li
|
56723ad580
|
moved `sum_len` out of the index
as it can be inferred.
|
2017-04-19 11:06:24 -04:00 |
|
Heng Li
|
f5cdd3f72f
|
is_hpc is a property of the index
|
2017-04-07 15:42:33 -04:00 |
|
Heng Li
|
b3bc4911ba
|
index can be compiled; not tested yet
|
2017-04-07 15:30:30 -04:00 |
|
Heng Li
|
01baa847a1
|
Homopolymer-compressed k-mer sketch
|
2017-04-06 15:37:34 -04:00 |