Heng Li
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7e6e8ca73f
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r792: fixed -Wextra warnings and resolved #184
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2018-06-19 15:26:58 -04:00 |
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Heng Li
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abe989e355
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the previous fix on int overflow is incomplete
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2018-05-11 10:12:57 -04:00 |
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Heng Li
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10c6dd2551
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r773: fixed an integer overflow
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2018-05-11 10:01:23 -04:00 |
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Heng Li
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734ac379bb
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r770: matching N bases not working properly (#155)
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2018-04-30 19:55:23 -04:00 |
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Heng Li
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7345621759
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r499: end bonus working; DP region needs improve!
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2017-10-11 00:14:25 -04:00 |
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Heng Li
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198849a716
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r491: an ambiguous base costs the same as gap ext
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2017-10-09 09:59:42 -04:00 |
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Heng Li
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46e8b6a4f9
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r338: portable CPU dispatch, which is the default
working with gcc, icc, clang and msvc.
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2017-09-03 20:29:24 -04:00 |
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Heng Li
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3c997ca016
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r337: support CPU dispatch for gcc-4.8+
using __builtin_cpu_supports()
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2017-09-03 14:29:49 -04:00 |
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Heng Li
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993a2bb521
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r301: separate introns from deletions
When an intron is adjacent to a deletion, the old code count both as introns,
which lead to an inaccurate exon boundary.
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2017-08-18 15:31:15 +08:00 |
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Heng Li
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61eef0575c
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separate out spliced alignment; not right yet
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2017-08-12 18:54:32 -04:00 |
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Heng Li
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163fa36ee6
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r281: don't open long gaps on query
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2017-08-10 15:04:59 -04:00 |
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Heng Li
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4badf2fcbf
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avoid wasted memory allocation for backtrack
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2017-08-08 11:29:46 -04:00 |
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Heng Li
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5934d68772
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r229: a new way to prevent out-of-band backtrack
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2017-07-29 23:52:30 -04:00 |
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Heng Li
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470021fd27
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r189: sync with ksw2 (no effective changes)
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2017-07-19 09:28:25 -04:00 |
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Heng Li
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f42790398d
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fixed a band boundary bug in ksw2
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2017-07-16 17:52:57 -04:00 |
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Heng Li
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cc554aee43
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r159: use two-piece gap penalty
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2017-07-08 10:26:00 -04:00 |