Heng Li
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827ca4b461
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r1012: fixed an off-by-one bug; resolves #489
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2021-04-07 23:31:31 -04:00 |
Marcus Stoiber
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d3dde2fdd4
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Convert from spaces to tabs.
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2021-04-05 11:55:10 -04:00 |
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Marcus Stoiber
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7db2e8d21a
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Convert python install from build_ext to setuptools setup_requires.
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2021-04-05 11:55:10 -04:00 |
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Heng Li
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0b41dd26a2
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r1009: fixed a compiler warning
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2021-04-05 11:43:13 -04:00 |
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Heng Li
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2b47846cd6
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r1008: don't parse space in BED
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2021-04-05 11:41:00 -04:00 |
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Heng Li
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67dd906a80
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bump travis python version to 3.9
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2021-03-23 09:12:49 -04:00 |
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Heng Li
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1b0bb7b0ba
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require overlap ratio when considering centromere
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2021-03-11 19:11:44 -05:00 |
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Heng Li
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1c4b7e8a48
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explained --junc-bed in README
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2021-03-06 19:44:24 -05:00 |
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Heng Li
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ecbc399fa2
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improved sveval
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2021-03-06 19:44:13 -05:00 |
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Heng Li
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4dfd495cc2
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added sveval
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2021-02-15 14:49:36 -05:00 |
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Heng Li
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194b457e79
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option to print errors only
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2021-02-07 12:58:03 -05:00 |
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Heng Li
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75c8933511
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evaluate large-scale misjoins
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2021-02-07 12:34:13 -05:00 |
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Heng Li
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1025993469
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print number of errors on each read
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2021-01-29 14:08:21 -05:00 |
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Heng Li
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a3253d1a6b
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added a command for simple VCF statistics
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2021-01-14 12:24:38 -05:00 |
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Heng Li
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2da649d1d7
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Merge remote-tracking branch 'origin/master'
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2020-11-15 18:47:15 -05:00 |
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Heng Li
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f995f55610
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added --mask-len for #659
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2020-08-21 11:12:50 -04:00 |
Armin Töpfer
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c9874e2dc5
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Initialize r->p if ez->zdropped
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2020-06-12 09:22:18 -04:00 |
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Heng Li
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ccb0f7b05d
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added a new Makefile for simde
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2020-04-25 22:43:29 -04:00 |
mbrcic
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66db9da7d8
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changed preprocessor conditionals for SIMDe
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2020-04-22 19:50:59 +02:00 |
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mbrcic
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2b3403f094
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fix for Neon after test.
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2020-04-21 02:08:21 +02:00 |
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mbrcic
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3e16e4e39d
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Added documentation entry for added functionality, simde and no_simd.
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2020-04-21 01:36:19 +02:00 |
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mbrcic
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f47e8a525e
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SIMDe made optional. Include paths changes for SIMDe.
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2020-04-21 01:08:32 +02:00 |
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mbrcic
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c172df7d2d
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fix for Neon
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2020-04-20 21:14:15 +02:00 |
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mbrcic
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9e6fdd376b
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Changed sse2neon with SIMDe. Added building non-SIMD version.
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2020-04-20 18:28:06 +02:00 |
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Heng Li
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29f67a1666
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r982: more accurate sum; output errors
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2020-04-14 16:18:53 -04:00 |
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Heng Li
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adde608a42
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Merge remote-tracking branch 'refs/remotes/origin/master'
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2020-04-14 15:52:57 -04:00 |
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Heng Li
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f10dff78dc
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r981: asmgene to check duplicate genes
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2020-04-14 15:52:36 -04:00 |
Jun Aruga
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d97bba9f27
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travis: added arm64 test.
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2020-04-13 08:33:03 -04:00 |
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Heng Li
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50775362bb
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r980: support auNGA
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2020-04-10 21:36:59 -04:00 |
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Heng Li
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0a5e386359
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r979: fixed asmgene wrong report. Resolves #581.
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2020-04-06 19:57:15 -04:00 |
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Heng Li
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cb56fb762a
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Merge branch 'master' of github.com:lh3/minimap2
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2020-03-22 19:17:01 -04:00 |
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Heng Li
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e2451e497a
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r975: asmstat without CIGAR/NM
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2020-03-22 19:16:43 -04:00 |
Jared Simpson
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d2de282d21
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remove second definition of kstring
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2020-03-02 13:18:37 -05:00 |
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Jared Simpson
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48cb80ea94
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change kstring_t integer storage size
This is for compatibility with kstring_t in htslib.
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2020-02-28 09:35:51 -05:00 |
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Heng Li
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6a4b9f9082
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r974: more informative msg on wrong FASTQ records
Resolves #510
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2020-01-21 10:56:59 -05:00 |
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Heng Li
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a7a01fe5bd
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r973: fixed compiling errors caused
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2020-01-21 10:43:31 -05:00 |
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Heng Li
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9dceae59a0
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r972: renamed --alt-diff to --alt-drop
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2020-01-21 10:33:39 -05:00 |
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Heng Li
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20a3987082
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Merge branch 'master' into alt
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2020-01-21 09:17:50 -05:00 |
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Heng Li
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eb3ed6993d
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support ALT mapping
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2020-01-21 09:17:50 -05:00 |
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Heng Li
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7996f04008
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r972: fixed negative de:f caused by ambiguous base
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2020-01-21 09:14:37 -05:00 |
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Heng Li
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d2e14705e7
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r968: allow large mini_batch; resolves #491
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2020-01-18 12:24:44 -05:00 |
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Heng Li
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24f50f38e8
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r967: no duplicated @SQ lines with --split-prefix
resolves #527 and #400
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2020-01-18 12:01:28 -05:00 |
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Heng Li
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04e015d803
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r966: minimap2 returns 1 on file failure (#532)
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2020-01-18 10:58:59 -05:00 |
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Heng Li
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040f74102c
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r965: added --chain-gap-scale for #540
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2020-01-18 10:29:33 -05:00 |
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Heng Li
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cdb7857841
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r963: --junc-bonus not working; resolves #513
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2020-01-06 22:03:50 -05:00 |
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Heng Li
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3c0d05d272
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r962: abort given wrong RG line; resolves #541
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2020-01-06 21:53:21 -05:00 |
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Heng Li
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47b646acbf
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r961: print indexed length
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2020-01-06 21:13:33 -05:00 |
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Heng Li
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a79cb3e991
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Merge remote-tracking branch 'origin/master'
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2019-12-23 17:33:56 -05:00 |
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Heng Li
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367aed4271
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added the asan and tsan targets to Makefile
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2019-12-23 17:33:10 -05:00 |
xdudiagnoa
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081df6ac7d
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Fix example.c seq read logic
for every idx should map all input seqs
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2019-11-11 00:46:07 -05:00 |