Heng Li
|
801bc84b01
|
r169: output more accurate col. 10&11 to PAF
In r168, col.10 is smaller than what it should be. This confuses miniasm.
|
2017-07-11 14:09:51 -04:00 |
|
Heng Li
|
4ee3202539
|
r164: unmapped read not properly flagged
|
2017-07-08 18:16:18 -04:00 |
|
Heng Li
|
fce87ce7bd
|
r121: output QUAL and unmapped to SAM
|
2017-06-30 14:40:54 -04:00 |
|
Heng Li
|
d11049eb32
|
r120: use max-scoring seg to control output
much better now
|
2017-06-30 14:21:44 -04:00 |
|
Heng Li
|
1a903486b9
|
r118: bugfix - regs unsorted before filtering
|
2017-06-30 12:52:28 -04:00 |
|
Heng Li
|
52b4d8e2c9
|
r115: set primary tag; still buggy
|
2017-06-29 23:48:35 -04:00 |
|
Heng Li
|
c4871f380c
|
r114: make SAM output better
|
2017-06-29 23:08:41 -04:00 |
|
Heng Li
|
11167f511b
|
r112: output z-drop
|
2017-06-29 22:08:46 -04:00 |
|
Heng Li
|
4cd456b9ba
|
r108: refactoring, move reg1 routines to hit.c
|
2017-06-29 19:44:11 -04:00 |
|
Heng Li
|
4b8e88a5f4
|
use long options
|
2017-06-26 12:31:36 -04:00 |
|
Heng Li
|
b1077ff14c
|
sam output
|
2017-06-25 22:05:20 -04:00 |
|
Heng Li
|
39083be9ab
|
separated formating printing
for SAM in future; and for performance
|
2017-06-25 16:13:54 -04:00 |