3 Commits (7e0d70bfd338869cfc479afd1146ad44ef0ebee8)

Author	SHA1	Message	Date
Heng Li	7e0d70bfd3	r445: pair coordinate adjustment working ... Next: mapq adjustment, which will be tricky...	2017-09-27 15:38:18 -04:00
Heng Li	a349d85280	r444: changed the way orientation is specified ... The old model doesn't work with RF or RR orientation. The new model only works with paired-end reads. For >2 segments, only FF is supported.	2017-09-27 12:33:10 -04:00
Heng Li	55d1e4f638	r440: better chain filtering for PE reads	2017-09-26 11:03:36 -04:00