Heng Li
|
0f7455cefa
|
r365: documented the "sr" preset
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2017-09-14 12:57:21 -04:00 |
|
Heng Li
|
ef3f7ea2f2
|
Release minimap2-2.1.1 (r341)
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2017-09-06 13:46:51 -04:00 |
|
Heng Li
|
bf8246f872
|
Release minimap2-2.1-r311
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2017-08-25 13:35:55 +08:00 |
|
Heng Li
|
0fe1a224ab
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r309: improved SAM header output
|
2017-08-25 10:35:58 +08:00 |
|
Heng Li
|
bbb37d95f2
|
support inserting RG lines
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2017-08-17 23:34:09 +08:00 |
|
Heng Li
|
b5f5929bf9
|
r296: expose splicing related options to CLI
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2017-08-13 21:37:51 -04:00 |
|
Heng Li
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53b3265d84
|
r290: in techrep, explain spliced alignment
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2017-08-12 15:40:49 -04:00 |
|
Heng Li
|
5a74088b74
|
r288: changed max intron length to 200k
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2017-08-12 12:39:21 -04:00 |
|
Heng Li
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d240318741
|
r287: refined CLI options and manpage
|
2017-08-12 12:26:04 -04:00 |
|
Heng Li
|
6840370f3c
|
Release minimap2-2.0 (r275)
|
2017-08-08 21:16:25 -04:00 |
|
Heng Li
|
d8d4d29b68
|
Release minimap2-2.0rc1-r232
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2017-07-30 14:32:40 -04:00 |
|
Heng Li
|
1f78e1ee53
|
r230: code formatting changes only
|
2017-07-30 12:31:40 -04:00 |
|
Heng Li
|
19d6ec885e
|
r224: inversion alignment around Z-drop break
|
2017-07-29 13:09:10 -04:00 |
|
Heng Li
|
84922cfe41
|
clarify that wrong seeding mainly occurs in LCRs
|
2017-07-28 14:33:15 -04:00 |
|
Heng Li
|
667b32a516
|
added algorithm overview
|
2017-07-27 18:50:39 -04:00 |
|
Heng Li
|
4aff301ef4
|
r190: default -k to 15; added -x map-ont
|
2017-07-19 10:11:14 -04:00 |
|
Heng Li
|
9a935dcef5
|
Fixed grammar errors
|
2017-07-18 11:37:58 -04:00 |
|
Heng Li
|
495a78e40a
|
Get documentation ready for release
|
2017-07-18 11:04:09 -04:00 |
|
Heng Li
|
71e2a97a4c
|
r180: changed -x asm5 settings
|
2017-07-18 00:00:36 -04:00 |
|
Heng Li
|
941059292e
|
r179: changed the preset for assembly alignment
|
2017-07-17 22:41:46 -04:00 |
|
Heng Li
|
b4280d186f
|
r176: removed seedcov_ratio; changed default opt
min_seedcov_ratio is not used
|
2017-07-12 12:47:46 -04:00 |
|
Heng Li
|
eeeb2ffb68
|
r174: make max-chain-skip work
The max-chain-skip heuristics did not work due to a bug. Without this
heuristics, chaining is too slow for long-read overlap.
|
2017-07-12 10:08:06 -04:00 |
|
Heng Li
|
cfa083a98b
|
r172: separated PacBio and ONT read overlapping
HPC k-mer works better for PacBio, but worse for ONT. Interesting...
|
2017-07-11 15:12:35 -04:00 |
|
Heng Li
|
1fee5f8edc
|
r160: -O and -E accept two numbers
|
2017-07-08 11:34:52 -04:00 |
|
Heng Li
|
cc554aee43
|
r159: use two-piece gap penalty
|
2017-07-08 10:26:00 -04:00 |
|
Heng Li
|
9823317e8f
|
r158: optionally ignore base quality
|
2017-07-05 18:23:50 -04:00 |
|
Heng Li
|
a94bc31311
|
r151: documentations
|
2017-07-03 12:11:07 -04:00 |
|
Heng Li
|
51cfb60520
|
r145: changed default -p from 2 to 0.8
For long reads, secondary alignments can be very information.
|
2017-07-02 22:51:45 -04:00 |
|
Heng Li
|
da90b614db
|
r141: replaced -b with -a (for SAM output)
-b sounds like BAM. I like -a better.
|
2017-07-01 16:54:59 -04:00 |
|
Heng Li
|
67cad9dff3
|
added limitations
|
2017-07-01 12:11:56 -04:00 |
|
Heng Li
|
a92bd75b7b
|
make the table fit 80 columns
|
2017-07-01 11:54:07 -04:00 |
|
Heng Li
|
02145b2166
|
explain option -d
|
2017-07-01 11:48:37 -04:00 |
|
Heng Li
|
b2ce3f9ed0
|
get rid of two more new lines
|
2017-07-01 11:37:58 -04:00 |
|
Heng Li
|
5ebe868db5
|
added two more new lines
|
2017-07-01 11:32:49 -04:00 |
|
Heng Li
|
cb6c277c62
|
removed unnecessary empty lines
On linux, these empty lines count.
|
2017-07-01 11:31:32 -04:00 |
|
Heng Li
|
b883d132e2
|
no effective change
|
2017-07-01 11:26:23 -04:00 |
|
Heng Li
|
2338e887d9
|
finished the first draft of manpage
|
2017-07-01 11:25:54 -04:00 |
|
Heng Li
|
d4301736b8
|
more manpage
|
2017-07-01 00:23:46 -04:00 |
|
Heng Li
|
41efd03d7a
|
r129: fixed memory leak caused by qualities
|
2017-06-30 23:48:00 -04:00 |
|
Heng Li
|
10910b72d1
|
backup
|
2017-06-30 23:31:38 -04:00 |
|
Heng Li
|
d118cafd25
|
added man page
|
2017-06-30 23:30:17 -04:00 |